Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
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Accession | NC_011369 |
Length | 4,537,948 |
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The map label for this gene is yeiA [H]
Identifier: 209550605
GI number: 209550605
Start: 3088014
End: 3089327
Strand: Direct
Name: yeiA [H]
Synonym: Rleg2_3029
Alternate gene names: 209550605
Gene position: 3088014-3089327 (Clockwise)
Preceding gene: 209550604
Following gene: 209550606
Centisome position: 68.05
GC content: 63.62
Gene sequence:
>1314_bases ATGGCTGATCTCCGCAATAATTTCGTCGGCATCAAGTCCCCGAACCCGTTCTGGCTGGCCTCTGCGCCGCCGACCGACAA GGCCTACAACGTCGAGCGCGCCTTCAAGGCCGGCTGGGGCGGCGTGGTCTGGAAGACGCTCGGCGAGGAAGGCCCGCCCG TCGTCAACGTCAACGGCCCGCGCTACGGCGCGATCTTCGGCGCAGACCGCCGCCTGCTCGGCCTAAACAATATCGAGCTC ATCACCGACCGCGACCTCTACACCAATCTCAGGGAAATGAAGCAGGTCAAGATGAACTGGCCGGATCGGGCGCTGATCGC CTCGATCATGGTGCCCTGCGAGGAACAGGCCTGGAAGTCCATCCTGCCACTCGTCGAAGAGACCGGCGCCGACGGAGTCG AACTGAATTTCGGCTGTCCGCACGGCATGTCGGAGCGAGGGATGGGCTCAGCCGTCGGCCAGGTGCCGGAATATATCGAA ATGGTCGTGCGCTGGTGCAAGCAATACACCCGTATGCCCATCATCACCAAGCTGACGCCCAACATCACCGACGTTCGCCG TCCTGCCCGCGCCGCCAAGGCCGGGGGCACCGATGCCGTCTCGCTGATCAACACGATCAATTCGATCGTATCCGTCGATC TCGACAACTTCGCCCCCAACCCGACGGTCGGCGGCAAGGGCAGCCATGGCGGCTATTGCGGCCCGGCGGTCAAGCCGATC GCCCTCAACATGGTGGCCGAGATCGCCCGAGATCCCGAAACCTACGGCCTGCCGATCTCCGGCATCGGCGGCATCACCAC CTGGCGAGACGCGGCTGAATTCCTCGTTCTCGGCGCCGGCAACGTCCAGGTCTGCACGGCCGCGATGACCTACGGCTTCA AGATCGTGCAGGAGATGATTTCCGGCCTTTCCGACTGGATGGACGAAAAAGGCCATCGCAGCCTCGACGATATCACCGGC CGCGCCGTGCCCAACGTCACCGACTGGCAGTATCTGAACCTCAACTACATCGCCAAGGCAAAGATCGACCAGGATGCCTG CATCAAATGCGGCCGCTGCCACATCGCCTGCGAGGACACCTCGCATCAGGCGATCACCAACGTCGTCAACGGCCTGCGCC ATTTCGAGGTGATCGAGGAGGAATGCGTCGGCTGCAATCTCTGCGTCAACGTCTGCCCGGTCGAGAACTGCATCACCATG GAGCCGCTTGCCGCCGGCACCCTCGACAAGCGCACCGGCCGCACCGTCGACCCGAACTACGCCAACTGGACGACGCACCC GAACAACCCGATGGCCCGCCAGGCGGCGGAGTGA
Upstream 100 bases:
>100_bases CGCCGTCGCTCACGGCCGCGACGCGGCTGAATCCATCCATCGCACCCTCACCGCAGCCGCCGCTCCGGCTGTCGCGGTTG CTTGAAGGGGAGAATGAATC
Downstream 100 bases:
>100_bases AAACTTCATTTGATTGAGCGATCCCCCGGCAACGGGGGATTTTGTTTGCGCGTGGATCAGATTAGGGTCGACCGAAAGCA AGCTGTGGCATGAAAATGGT
Product: dihydropyrimidine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MADLRNNFVGIKSPNPFWLASAPPTDKAYNVERAFKAGWGGVVWKTLGEEGPPVVNVNGPRYGAIFGADRRLLGLNNIEL ITDRDLYTNLREMKQVKMNWPDRALIASIMVPCEEQAWKSILPLVEETGADGVELNFGCPHGMSERGMGSAVGQVPEYIE MVVRWCKQYTRMPIITKLTPNITDVRRPARAAKAGGTDAVSLINTINSIVSVDLDNFAPNPTVGGKGSHGGYCGPAVKPI ALNMVAEIARDPETYGLPISGIGGITTWRDAAEFLVLGAGNVQVCTAAMTYGFKIVQEMISGLSDWMDEKGHRSLDDITG RAVPNVTDWQYLNLNYIAKAKIDQDACIKCGRCHIACEDTSHQAITNVVNGLRHFEVIEEECVGCNLCVNVCPVENCITM EPLAAGTLDKRTGRTVDPNYANWTTHPNNPMARQAAE
Sequences:
>Translated_437_residues MADLRNNFVGIKSPNPFWLASAPPTDKAYNVERAFKAGWGGVVWKTLGEEGPPVVNVNGPRYGAIFGADRRLLGLNNIEL ITDRDLYTNLREMKQVKMNWPDRALIASIMVPCEEQAWKSILPLVEETGADGVELNFGCPHGMSERGMGSAVGQVPEYIE MVVRWCKQYTRMPIITKLTPNITDVRRPARAAKAGGTDAVSLINTINSIVSVDLDNFAPNPTVGGKGSHGGYCGPAVKPI ALNMVAEIARDPETYGLPISGIGGITTWRDAAEFLVLGAGNVQVCTAAMTYGFKIVQEMISGLSDWMDEKGHRSLDDITG RAVPNVTDWQYLNLNYIAKAKIDQDACIKCGRCHIACEDTSHQAITNVVNGLRHFEVIEEECVGCNLCVNVCPVENCITM EPLAAGTLDKRTGRTVDPNYANWTTHPNNPMARQAAE >Mature_436_residues ADLRNNFVGIKSPNPFWLASAPPTDKAYNVERAFKAGWGGVVWKTLGEEGPPVVNVNGPRYGAIFGADRRLLGLNNIELI TDRDLYTNLREMKQVKMNWPDRALIASIMVPCEEQAWKSILPLVEETGADGVELNFGCPHGMSERGMGSAVGQVPEYIEM VVRWCKQYTRMPIITKLTPNITDVRRPARAAKAGGTDAVSLINTINSIVSVDLDNFAPNPTVGGKGSHGGYCGPAVKPIA LNMVAEIARDPETYGLPISGIGGITTWRDAAEFLVLGAGNVQVCTAAMTYGFKIVQEMISGLSDWMDEKGHRSLDDITGR AVPNVTDWQYLNLNYIAKAKIDQDACIKCGRCHIACEDTSHQAITNVVNGLRHFEVIEEECVGCNLCVNVCPVENCITME PLAAGTLDKRTGRTVDPNYANWTTHPNNPMARQAAE
Specific function: Unknown
COG id: COG0167
COG function: function code F; Dihydroorotate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Homo sapiens, GI119943098, Length=334, Percent_Identity=36.5269461077844, Blast_Score=213, Evalue=4e-55, Organism=Escherichia coli, GI87082059, Length=398, Percent_Identity=43.7185929648241, Blast_Score=328, Evalue=5e-91, Organism=Caenorhabditis elegans, GI71984108, Length=329, Percent_Identity=37.6899696048632, Blast_Score=214, Evalue=6e-56, Organism=Saccharomyces cerevisiae, GI6322633, Length=329, Percent_Identity=27.355623100304, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640763, Length=317, Percent_Identity=38.4858044164038, Blast_Score=213, Evalue=1e-55, Organism=Drosophila melanogaster, GI18858217, Length=317, Percent_Identity=38.4858044164038, Blast_Score=213, Evalue=1e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013785 - InterPro: IPR005720 - InterPro: IPR012135 - InterPro: IPR012285 [H]
Pfam domain/function: PF01180 DHO_dh [H]
EC number: NA
Molecular weight: Translated: 47651; Mature: 47520
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADLRNNFVGIKSPNPFWLASAPPTDKAYNVERAFKAGWGGVVWKTLGEEGPPVVNVNGP CCCCCCCEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHHHCCCCCCCEEEECCC RYGAIFGADRRLLGLNNIELITDRDLYTNLREMKQVKMNWPDRALIASIMVPCEEQAWKS CEEEEECCCCEEECCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHH ILPLVEETGADGVELNFGCPHGMSERGMGSAVGQVPEYIEMVVRWCKQYTRMPIITKLTP HHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC NITDVRRPARAAKAGGTDAVSLINTINSIVSVDLDNFAPNPTVGGKGSHGGYCGPAVKPI CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECHHCCCCCCCCCCCCCCCCCCCCCCHHH ALNMVAEIARDPETYGLPISGIGGITTWRDAAEFLVLGAGNVQVCTAAMTYGFKIVQEMI HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCEEEECCCCCEEHHHHHHHHHHHHHHHH SGLSDWMDEKGHRSLDDITGRAVPNVTDWQYLNLNYIAKAKIDQDACIKCGRCHIACEDT HHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEECCEEEEEECCCHHHHHCCCCEEEEECCC SHQAITNVVNGLRHFEVIEEECVGCNLCVNVCPVENCITMEPLAAGTLDKRTGRTVDPNY CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCHHCCCCCCCCCCCCCCCC ANWTTHPNNPMARQAAE CCCCCCCCCCCHHCCCC >Mature Secondary Structure ADLRNNFVGIKSPNPFWLASAPPTDKAYNVERAFKAGWGGVVWKTLGEEGPPVVNVNGP CCCCCCEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHHHCCCCCCCEEEECCC RYGAIFGADRRLLGLNNIELITDRDLYTNLREMKQVKMNWPDRALIASIMVPCEEQAWKS CEEEEECCCCEEECCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHH ILPLVEETGADGVELNFGCPHGMSERGMGSAVGQVPEYIEMVVRWCKQYTRMPIITKLTP HHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC NITDVRRPARAAKAGGTDAVSLINTINSIVSVDLDNFAPNPTVGGKGSHGGYCGPAVKPI CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECHHCCCCCCCCCCCCCCCCCCCCCCHHH ALNMVAEIARDPETYGLPISGIGGITTWRDAAEFLVLGAGNVQVCTAAMTYGFKIVQEMI HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCEEEECCCCCEEHHHHHHHHHHHHHHHH SGLSDWMDEKGHRSLDDITGRAVPNVTDWQYLNLNYIAKAKIDQDACIKCGRCHIACEDT HHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEECCEEEEEECCCHHHHHCCCCEEEEECCC SHQAITNVVNGLRHFEVIEEECVGCNLCVNVCPVENCITMEPLAAGTLDKRTGRTVDPNY CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCHHCCCCCCCCCCCCCCCC ANWTTHPNNPMARQAAE CCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 1719366 [H]