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The map label for this gene is ycjZ [H]

Identifier: 209550507

GI number: 209550507

Start: 2988649

End: 2989539

Strand: Direct

Name: ycjZ [H]

Synonym: Rleg2_2930

Alternate gene names: 209550507

Gene position: 2988649-2989539 (Clockwise)

Preceding gene: 209550504

Following gene: 209550509

Centisome position: 65.86

GC content: 62.63

Gene sequence:

>891_bases
ATGCGCCGCGAAGAGATGGCCGACCTGACTGCGTTCGTCGTCGTGGCCGAAGAGCGCAATTACACCCGCGCGGCCAACAA
GCTCGGCATCTCGCAGTCCGCACTCAGCGGGATCGTCCGGCGGCTCGAAGAGAAGCTGGGCGTCCGTCTCCTAGCGCGAA
CCACCCGCAGCGTAGCCCCAACCGAAGCCGGGGAGCGGCTTGTCCAGACGCTCAGGCCGATGCTGCAGGACATTGATCAA
GTGGTCGCCGACCTTAGCGAGTTCCGTGACAAGCCCGCGGGAACCATCCGCATTACGACCGTCGAGCATGCTGCGAGGAC
CATCCTGCGACCAGCGGTGACGAAGCTGTTGAAAGATTATCCCGACATCGTCATCGAGATAATCATCGACTACGGCCTAG
TCGATCTCGTCACTGATCGGTTCGATGCCGGGGTCCGGCTCGGAGTGCAGGTGGCCAAGGACATGATCGCCGTCCGGATC
AGTGACGACGTTCCGATGGCGATCGTCGGATCACCCGCGTATTTCGAGCAGCACGCACCTCCGGCGACCCCGGAAGACCT
CGTCGAACATCGCGCAATCAATCTTCGCCTCCCGACCAGCGGGGTCCTCAATGCCTGGCGCTTCCTTCAGGACGGTCGCG
AGGTCAGGGTTCGTGTCGACGGCCCACTCGTCTTCAACACGATCGATCTGATACTCGACGCCGCGCTCGACGGATGCGGG
CTCGCCTACATGCCTCTCGATCAGGTGGAGAAACACGTGGCGGAGGGTCGGCTGGTCGCGGTTCTCCGGAGTTGGACGCC
GCCGTTGCCCGCCTACCACCTGTACTATCCCAACAGGGCATCTTCCCCGGCCTTCAAACTCTTCGTAGAAGCCGTAAGAC
ACCGCCGCTGA

Upstream 100 bases:

>100_bases
ATGGGCAAATCCACTTCTCAGCGGATGACTGGAAAAATAGGCCTGTTGCGGCTATCACTCTATGGCAGAGATCTGCTTGA
ACTTATCAGTAAGGTGATAG

Downstream 100 bases:

>100_bases
ACGACGACAGGGCATCCACGCCGATCGCGCCTTGGCAGGGATGGGCGCTGAGTTGCTCGAGATCGGGTGCGGCCACCGGA
TGAAGTTGAATAAACTCCTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRREEMADLTAFVVVAEERNYTRAANKLGISQSALSGIVRRLEEKLGVRLLARTTRSVAPTEAGERLVQTLRPMLQDIDQ
VVADLSEFRDKPAGTIRITTVEHAARTILRPAVTKLLKDYPDIVIEIIIDYGLVDLVTDRFDAGVRLGVQVAKDMIAVRI
SDDVPMAIVGSPAYFEQHAPPATPEDLVEHRAINLRLPTSGVLNAWRFLQDGREVRVRVDGPLVFNTIDLILDAALDGCG
LAYMPLDQVEKHVAEGRLVAVLRSWTPPLPAYHLYYPNRASSPAFKLFVEAVRHRR

Sequences:

>Translated_296_residues
MRREEMADLTAFVVVAEERNYTRAANKLGISQSALSGIVRRLEEKLGVRLLARTTRSVAPTEAGERLVQTLRPMLQDIDQ
VVADLSEFRDKPAGTIRITTVEHAARTILRPAVTKLLKDYPDIVIEIIIDYGLVDLVTDRFDAGVRLGVQVAKDMIAVRI
SDDVPMAIVGSPAYFEQHAPPATPEDLVEHRAINLRLPTSGVLNAWRFLQDGREVRVRVDGPLVFNTIDLILDAALDGCG
LAYMPLDQVEKHVAEGRLVAVLRSWTPPLPAYHLYYPNRASSPAFKLFVEAVRHRR
>Mature_296_residues
MRREEMADLTAFVVVAEERNYTRAANKLGISQSALSGIVRRLEEKLGVRLLARTTRSVAPTEAGERLVQTLRPMLQDIDQ
VVADLSEFRDKPAGTIRITTVEHAARTILRPAVTKLLKDYPDIVIEIIIDYGLVDLVTDRFDAGVRLGVQVAKDMIAVRI
SDDVPMAIVGSPAYFEQHAPPATPEDLVEHRAINLRLPTSGVLNAWRFLQDGREVRVRVDGPLVFNTIDLILDAALDGCG
LAYMPLDQVEKHVAEGRLVAVLRSWTPPLPAYHLYYPNRASSPAFKLFVEAVRHRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=60.8108108108108, Blast_Score=376, Evalue=1e-105,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=36.986301369863, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=29.3706293706294, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=30.1038062283737, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789639, Length=274, Percent_Identity=30.2919708029197, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=26.2237762237762, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=27.0175438596491, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788706, Length=258, Percent_Identity=24.8062015503876, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI145693105, Length=149, Percent_Identity=27.5167785234899, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788748, Length=118, Percent_Identity=33.8983050847458, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1790783, Length=298, Percent_Identity=26.1744966442953, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787879, Length=123, Percent_Identity=36.5853658536585, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367136, Length=121, Percent_Identity=33.8842975206612, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790011, Length=268, Percent_Identity=26.1194029850746, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790399, Length=174, Percent_Identity=29.8850574712644, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=31.3868613138686, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786448, Length=275, Percent_Identity=24.7272727272727, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789173, Length=260, Percent_Identity=25, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33033; Mature: 33033

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRREEMADLTAFVVVAEERNYTRAANKLGISQSALSGIVRRLEEKLGVRLLARTTRSVAP
CCHHHHHHHEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TEAGERLVQTLRPMLQDIDQVVADLSEFRDKPAGTIRITTVEHAARTILRPAVTKLLKDY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
PDIVIEIIIDYGLVDLVTDRFDAGVRLGVQVAKDMIAVRISDDVPMAIVGSPAYFEQHAP
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEECCCCCEEEECCCHHHHCCCC
PATPEDLVEHRAINLRLPTSGVLNAWRFLQDGREVRVRVDGPLVFNTIDLILDAALDGCG
CCCHHHHHHHCEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
LAYMPLDQVEKHVAEGRLVAVLRSWTPPLPAYHLYYPNRASSPAFKLFVEAVRHRR
EEECCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MRREEMADLTAFVVVAEERNYTRAANKLGISQSALSGIVRRLEEKLGVRLLARTTRSVAP
CCHHHHHHHEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TEAGERLVQTLRPMLQDIDQVVADLSEFRDKPAGTIRITTVEHAARTILRPAVTKLLKDY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
PDIVIEIIIDYGLVDLVTDRFDAGVRLGVQVAKDMIAVRISDDVPMAIVGSPAYFEQHAP
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEECCCCCEEEECCCHHHHCCCC
PATPEDLVEHRAINLRLPTSGVLNAWRFLQDGREVRVRVDGPLVFNTIDLILDAALDGCG
CCCHHHHHHHCEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
LAYMPLDQVEKHVAEGRLVAVLRSWTPPLPAYHLYYPNRASSPAFKLFVEAVRHRR
EEECCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]