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The map label for this gene is oppC [H]

Identifier: 209550415

GI number: 209550415

Start: 2886739

End: 2887656

Strand: Direct

Name: oppC [H]

Synonym: Rleg2_2836

Alternate gene names: 209550415

Gene position: 2886739-2887656 (Clockwise)

Preceding gene: 209550414

Following gene: 209550416

Centisome position: 63.61

GC content: 62.2

Gene sequence:

>918_bases
ATGATCCTTAACCCCGCAAAACGCGAACTTCTCGCCCAGGAGCTTCTGGAGGCGGAAGGCCTTGCACCTGAAGGCCGCTC
GCTCACCAGGGATGCGCTGCGCCGCCTCGGGCGCAACAAGGCGGCCGTGCTGTCGATCGTCGTCCTGGCACTGCTGATCC
TGGCTGCTTTCCTCGGCCCCTGGTTCATTCCCTTCAATTACGAGGATCCGGACTGGGCCGCCTTCCGCATCCCGCCCTCG
ATCGAGACCGGCCACTATTTCGGCACCGACCCGAACGGCCGCGATCTCCTCGCCCGCGTCCTTTATGGCACCCGCATCTC
GCTTGCCGTAGCACTGACGGCGACCGTCGTCTCGGTCGTCATCGGCGTGCTCTACGGTGCGATATCCGGCTATATCGGCG
GCAGGCTGGACGCGATCATGATGCGCTTCGTCGATATCATGTATGCGCTTCCCTACATCCTCTTCGTCATCCTGCTGATG
GTGATCTTCGGCCGCAACGTCTATCTGCTCTTTGCCGCCATCGGCGCGCTGGAGTGGCTGACCATGGCCCGTATCGTGCG
TGGCCAGACGCTGTCGATCAAGCATCGCGAATTCATCGAGGCCGCCCGAGCCTCCGGGCAGCGGCCGTTCAAGATCATTG
TCAAACACATCATTCCGAATCTCGTCGGTCCGGTGGTCATCTTCGCAGCACTGACCGTGCCCGAAATCATCGCCACCGAA
AGCTTCCTGTCCTATCTCGGTTTCGGCGTCCAGGAACCGCTGACCTCGCTCGGCACGCTGATCGCCGAAGGGACCGATGC
CATGGAAAGCATGCCCTGGCTGCTGATTTTCCCGGCGAGCTTCCTCGTGGCCCTGCTGCTCAGTCTCCTCTTCATCGGCG
ACGGCCTGCGCGACGCGTTCGACCCGAAGGATCGCTAA

Upstream 100 bases:

>100_bases
TGGTTCTCGGTACGGTCATCTTCTACATGGTGTTGATCGTGTTCCTGAACCTTCTGGTCGATATCGCCTATGCCTGGCTG
GATCCGAAAGTGAGAAACCG

Downstream 100 bases:

>100_bases
GAATGCCCTACGAAACACAAAAAGACGTCCTCCTCGAACTCAAGGACTATTCGATCACCTTCAAAACACCGGATGGCGAA
GTGAAGGCGGTCTCGAACAT

Product: binding-protein-dependent transporters inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MILNPAKRELLAQELLEAEGLAPEGRSLTRDALRRLGRNKAAVLSIVVLALLILAAFLGPWFIPFNYEDPDWAAFRIPPS
IETGHYFGTDPNGRDLLARVLYGTRISLAVALTATVVSVVIGVLYGAISGYIGGRLDAIMMRFVDIMYALPYILFVILLM
VIFGRNVYLLFAAIGALEWLTMARIVRGQTLSIKHREFIEAARASGQRPFKIIVKHIIPNLVGPVVIFAALTVPEIIATE
SFLSYLGFGVQEPLTSLGTLIAEGTDAMESMPWLLIFPASFLVALLLSLLFIGDGLRDAFDPKDR

Sequences:

>Translated_305_residues
MILNPAKRELLAQELLEAEGLAPEGRSLTRDALRRLGRNKAAVLSIVVLALLILAAFLGPWFIPFNYEDPDWAAFRIPPS
IETGHYFGTDPNGRDLLARVLYGTRISLAVALTATVVSVVIGVLYGAISGYIGGRLDAIMMRFVDIMYALPYILFVILLM
VIFGRNVYLLFAAIGALEWLTMARIVRGQTLSIKHREFIEAARASGQRPFKIIVKHIIPNLVGPVVIFAALTVPEIIATE
SFLSYLGFGVQEPLTSLGTLIAEGTDAMESMPWLLIFPASFLVALLLSLLFIGDGLRDAFDPKDR
>Mature_305_residues
MILNPAKRELLAQELLEAEGLAPEGRSLTRDALRRLGRNKAAVLSIVVLALLILAAFLGPWFIPFNYEDPDWAAFRIPPS
IETGHYFGTDPNGRDLLARVLYGTRISLAVALTATVVSVVIGVLYGAISGYIGGRLDAIMMRFVDIMYALPYILFVILLM
VIFGRNVYLLFAAIGALEWLTMARIVRGQTLSIKHREFIEAARASGQRPFKIIVKHIIPNLVGPVVIFAALTVPEIIATE
SFLSYLGFGVQEPLTSLGTLIAEGTDAMESMPWLLIFPASFLVALLLSLLFIGDGLRDAFDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=305, Percent_Identity=53.4426229508197, Blast_Score=304, Evalue=5e-84,
Organism=Escherichia coli, GI1787054, Length=279, Percent_Identity=34.0501792114695, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787760, Length=261, Percent_Identity=32.183908045977, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1788505, Length=232, Percent_Identity=39.6551724137931, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1789964, Length=270, Percent_Identity=34.4444444444444, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=27.1604938271605, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787549, Length=280, Percent_Identity=25.3571428571429, Blast_Score=95, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33501; Mature: 33501

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNPAKRELLAQELLEAEGLAPEGRSLTRDALRRLGRNKAAVLSIVVLALLILAAFLGP
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
WFIPFNYEDPDWAAFRIPPSIETGHYFGTDPNGRDLLARVLYGTRISLAVALTATVVSVV
CEECCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGVLYGAISGYIGGRLDAIMMRFVDIMYALPYILFVILLMVIFGRNVYLLFAAIGALEWL
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TMARIVRGQTLSIKHREFIEAARASGQRPFKIIVKHIIPNLVGPVVIFAALTVPEIIATE
HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLSYLGFGVQEPLTSLGTLIAEGTDAMESMPWLLIFPASFLVALLLSLLFIGDGLRDAF
HHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCHHHCC
DPKDR
CCCCC
>Mature Secondary Structure
MILNPAKRELLAQELLEAEGLAPEGRSLTRDALRRLGRNKAAVLSIVVLALLILAAFLGP
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
WFIPFNYEDPDWAAFRIPPSIETGHYFGTDPNGRDLLARVLYGTRISLAVALTATVVSVV
CEECCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGVLYGAISGYIGGRLDAIMMRFVDIMYALPYILFVILLMVIFGRNVYLLFAAIGALEWL
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TMARIVRGQTLSIKHREFIEAARASGQRPFKIIVKHIIPNLVGPVVIFAALTVPEIIATE
HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLSYLGFGVQEPLTSLGTLIAEGTDAMESMPWLLIFPASFLVALLLSLLFIGDGLRDAF
HHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCHHHCC
DPKDR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]