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The map label for this gene is raiI [H]

Identifier: 209550248

GI number: 209550248

Start: 2714871

End: 2715536

Strand: Direct

Name: raiI [H]

Synonym: Rleg2_2668

Alternate gene names: 209550248

Gene position: 2714871-2715536 (Clockwise)

Preceding gene: 209550247

Following gene: 209550249

Centisome position: 59.83

GC content: 61.11

Gene sequence:

>666_bases
ATGTTCGTTATCATTCAGGCACATGAGTATCAGAAATACGCTGCCGTACTCGACCAGATGTTTCGCCTGCGCAAGAAGGT
GTTCGCCGATACGCTCGGTTGGGACGTTCCCGTCGTCGGCCCTTACGAGCGCGACAGCTACGATGCGCTGGCTCCTGCCT
ATCTCGTCTGGTGCAATGACAGCCGGACCCGCCTTTACGGCGGCATGCGCCTGATGCCGACGACCGGCCCGACCCTTCTC
TACGACGTTTTCCGCGAGACGTTTCCGGATGCCGCCGATCTCATCGCGCCGGGCATCTGGGAGGGCACGCGCATGTGCAT
CGACGAAGAGGCGATCGCCAGGGATTTCCCCCAGATCGACGCCGGCCGCGCCTTTTCGATGATGTTGCTTGCGCTTTGCG
AATGCGCGCTCGATCACGGCATCCATACGATGATTTCCAACTACGAGCCCTATCTCAAGCGCGTCTACAAGCGCGCAGGC
GCCGAAGTGGAAGAACTCGGCCGCGCAGACGGCTATGGCAAGCACCCCGTCTGCTGCGGCGCCTTCGAAGTGTCTGACCG
CGTGCTGCGCAAGATGCGCACCGCCCTCGGCCTGACCCTACCCCTTTATATAAGACATGTTCCGGCCCGCTCGGTCGTGA
CGCAATTCCTGGAGATGGCAGCATGA

Upstream 100 bases:

>100_bases
GCTAATCCCCTCATCTGAGGGGGCCCATCTGAGGGAATTTTCGATCGGGCCGGCCTGAACCATTCTGCTCTCCACGAACT
TGTAAACGCTGGAGGGCAAA

Downstream 100 bases:

>100_bases
ACCGCCTCGCTGAAACCGCAATACAGAAAGATATCGGCGCCTTGGAGCGCCACGTGCTCGCCTCCCGCGACATCGCCACG
CAGATCGGGGATCCCTTCCT

Product: autoinducer synthesis protein

Products: NA

Alternate protein names: Autoinducer synthesis protein raiI [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MFVIIQAHEYQKYAAVLDQMFRLRKKVFADTLGWDVPVVGPYERDSYDALAPAYLVWCNDSRTRLYGGMRLMPTTGPTLL
YDVFRETFPDAADLIAPGIWEGTRMCIDEEAIARDFPQIDAGRAFSMMLLALCECALDHGIHTMISNYEPYLKRVYKRAG
AEVEELGRADGYGKHPVCCGAFEVSDRVLRKMRTALGLTLPLYIRHVPARSVVTQFLEMAA

Sequences:

>Translated_221_residues
MFVIIQAHEYQKYAAVLDQMFRLRKKVFADTLGWDVPVVGPYERDSYDALAPAYLVWCNDSRTRLYGGMRLMPTTGPTLL
YDVFRETFPDAADLIAPGIWEGTRMCIDEEAIARDFPQIDAGRAFSMMLLALCECALDHGIHTMISNYEPYLKRVYKRAG
AEVEELGRADGYGKHPVCCGAFEVSDRVLRKMRTALGLTLPLYIRHVPARSVVTQFLEMAA
>Mature_221_residues
MFVIIQAHEYQKYAAVLDQMFRLRKKVFADTLGWDVPVVGPYERDSYDALAPAYLVWCNDSRTRLYGGMRLMPTTGPTLL
YDVFRETFPDAADLIAPGIWEGTRMCIDEEAIARDFPQIDAGRAFSMMLLALCECALDHGIHTMISNYEPYLKRVYKRAG
AEVEELGRADGYGKHPVCCGAFEVSDRVLRKMRTALGLTLPLYIRHVPARSVVTQFLEMAA

Specific function: Required for the synthesis of autoinducer molecules which bind to raiR and that are involved in the restriction of nodule number [H]

COG id: COG3916

COG function: function code TQ; N-acyl-L-homoserine lactone synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the autoinducer synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016181
- InterPro:   IPR001690
- InterPro:   IPR018311 [H]

Pfam domain/function: PF00765 Autoind_synth [H]

EC number: =2.3.1.184 [H]

Molecular weight: Translated: 25027; Mature: 25027

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVIIQAHEYQKYAAVLDQMFRLRKKVFADTLGWDVPVVGPYERDSYDALAPAYLVWCND
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEECC
SRTRLYGGMRLMPTTGPTLLYDVFRETFPDAADLIAPGIWEGTRMCIDEEAIARDFPQID
CCHHHHCCEEEECCCCHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHCCHHHHHHCCCCCC
AGRAFSMMLLALCECALDHGIHTMISNYEPYLKRVYKRAGAEVEELGRADGYGKHPVCCG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEC
AFEVSDRVLRKMRTALGLTLPLYIRHVPARSVVTQFLEMAA
HHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFVIIQAHEYQKYAAVLDQMFRLRKKVFADTLGWDVPVVGPYERDSYDALAPAYLVWCND
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEECC
SRTRLYGGMRLMPTTGPTLLYDVFRETFPDAADLIAPGIWEGTRMCIDEEAIARDFPQID
CCHHHHCCEEEECCCCHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHCCHHHHHHCCCCCC
AGRAFSMMLLALCECALDHGIHTMISNYEPYLKRVYKRAGAEVEELGRADGYGKHPVCCG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEC
AFEVSDRVLRKMRTALGLTLPLYIRHVPARSVVTQFLEMAA
HHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9473034 [H]