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The map label for this gene is raiR [H]

Identifier: 209550247

GI number: 209550247

Start: 2714001

End: 2714726

Strand: Direct

Name: raiR [H]

Synonym: Rleg2_2667

Alternate gene names: 209550247

Gene position: 2714001-2714726 (Clockwise)

Preceding gene: 209550245

Following gene: 209550248

Centisome position: 59.81

GC content: 61.29

Gene sequence:

>726_bases
ATGATCGAGAATACCTATAGCGATAAGTTCGAGTCCGCCTTCGAACAGATCAAGGCCGCAGCCAATGTGGATGCTGCCAT
CCGCATTCTTCAGGCCGAATATGGCCTCGGTTTCGTCACCTACCATCTCGCCCAGACGATCGCCAGCAAGATCGATTCGC
CCTTCGTGCGCACCACCTATCCGGATGCCTGGGTCTCCCGCTACCTGCTGAACAGCTATGTGAAGGTCGATCCGATCGTC
AAACAGGGCTTCGAGCGCCAGCTGCCTTTCGACTGGAGCGAGGTCGAGCCGACGCCCGAAGCCTATGCCATGCTGGTCGA
TGCCCAGAAGCACGGCATCGGCGGCAACGGCTACTCCATTCCCGTCGCCGACAAGGCGCAGCGCCGCGCGCTGCTGTCGG
TGAATGCCCGCATCCCGGTCGAGGAATGGACCGAGCTCGTCCGCCGCTGCCGCAACGAATGGATCGAAATCGCCCATCTG
ATCCATCGCAAGGCGGTCTACGAGCTGCACGGCGAGAACGACCCGGTGCCGGCATTGTCGCCGCGCGAGATCGAGTGCTT
GCACTGGACGGCACTCGGCAAGGATTACAAGGATATCTCGGTCATCCTCGGCATTTCCGAGCACACCACGCGCGATTATC
TGAAGACCGCCCGCTTCAAGCTCGGCTGCGCCACGATCTCGGCCGCCGCCTCGCGGGCCGTGCAATTGCGCATCATCAAT
CCATAG

Upstream 100 bases:

>100_bases
CTAGCAGGCGGAGCCGGGATTGTCATTCCCCGCATATGTGGGGGTGCCTTGTATTTGTGACGGTCCTCACGGTAGGATTG
AGGGAATTGGGGCAGTGGAA

Downstream 100 bases:

>100_bases
TCTTCGGCCGGCGCATCTCGTGACGTCAGTCGTCATACTTATGGGCTAATCCCCTCATCTGAGGGGGCCCATCTGAGGGA
ATTTTCGATCGGGCCGGCCT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MIENTYSDKFESAFEQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLLNSYVKVDPIV
KQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSVNARIPVEEWTELVRRCRNEWIEIAHL
IHRKAVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRIIN
P

Sequences:

>Translated_241_residues
MIENTYSDKFESAFEQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLLNSYVKVDPIV
KQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSVNARIPVEEWTELVRRCRNEWIEIAHL
IHRKAVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRIIN
P
>Mature_241_residues
MIENTYSDKFESAFEQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLLNSYVKVDPIV
KQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSVNARIPVEEWTELVRRCRNEWIEIAHL
IHRKAVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRIIN
P

Specific function: Unknown

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27229; Mature: 27229

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENTYSDKFESAFEQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIASKIDSPFVRTTY
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCC
PDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSI
CHHHHHHHHHHHHHCCCHHHHCCHHHCCCCCCCCCCCCHHHHEEEEEHHHCCCCCCCCEE
PVADKAQRRALLSVNARIPVEEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALS
CCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRIIN
CCCEEEEEEEHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
P
C
>Mature Secondary Structure
MIENTYSDKFESAFEQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIASKIDSPFVRTTY
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCC
PDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSI
CHHHHHHHHHHHHHCCCHHHHCCHHHCCCCCCCCCCCCHHHHEEEEEHHHCCCCCCCCEE
PVADKAQRRALLSVNARIPVEEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALS
CCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRIIN
CCCEEEEEEEHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9473034 [H]