Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 209549401

GI number: 209549401

Start: 1855616

End: 1856710

Strand: Reverse

Name: rlpA [H]

Synonym: Rleg2_1807

Alternate gene names: 209549401

Gene position: 1856710-1855616 (Counterclockwise)

Preceding gene: 209549404

Following gene: 209549400

Centisome position: 40.92

GC content: 62.65

Gene sequence:

>1095_bases
ATGAAATTGGGATACGGGGCGGCGTCTTTCGCAACGACAGCACGGTGGCTGGCGGTATCGGCGATGTGTGCGACGGTTGC
GGCGTGCGGCACGACACAGGCCGTGCCGAAAAAGAAAGCCCACGGCAAAGAATATTTCTCCGAATCCGAATATGGCGTGA
AGGCGAGCCCGCGGGTCGCCACCGGCAACAATATCCCCAAGGGCGGCGGCCGCTACATCGTCGGCAATCCTTACGAGGTG
AAGGGCAAGTGGTATTATCCGAAAGAAGACTTCGCCTATAACAAGGTCGGCGTCGCGTCCTGGTACGGCTCGGCCTTTCA
TGGGCGCCTGACGGCGAACGGCGAAGTCTACGATCAGATGCATCTTTCCGCCGCGCATCCGACCTTCCCGTTGCCGAGCT
ATGCGCGCGTCACCAATCTAGAAAGCGGTTCTTCGGTCATCGTGCGCGTCAACGATCGCGGCCCCTATCATGAAGGCCGC
ATCATCGACCTGTCGAACAAGACGGCAGACATGCTGGATCTGCAGCATAGCGGCACCGGCAAGGTGCGCGTGCAATATGT
CGGCCGCGCCCGCATGGACGGCCACGACATGCCCTATCTGATGGCCTCCTACGTGCCCAAGGGCAGCCGCATTCCCGGCA
TCAATCCGGAAGGTCAGATCGCAACCGGCGTAATGGTCGCCTCCAACAGCCGCAAGATCACCCGCGACCAGCTGCAGAGT
TCGGAAGATTACGAGACGCCGGCCAACGTGCCGGTACCGATGTCGGCGACTTCCTATGCCGGCTCGACACCGAGCGCCCG
CTACAATGCGGCGCCCGCTCTTGCGCCGGGTGCCCATGTCTTGGTCGCACCGCCGGCACCGTCCGCCAACAATGCCCCGC
AGGCCTTCGACCAGATGGTCGTGCTGCCGGAGATCGGTCCCATGCCCTATGAGCGGCCGCTCAGCTCTCTCGCGCTCGGT
TACCAAAACGAAGACGTGAAGACGGTGACCGTCGATCTCGCCTTCGACGCGGTGATGGCGCGCAATGACGGGCTGACGCA
GGAGTCGATCCTGGCCTCGGCCAAGCGTCGTCAGGCCAAATTCGCCGCGCGCTGA

Upstream 100 bases:

>100_bases
GCAAGATTAAAGCCTCGTTAGGCGGGCGGGGATAAGGCGTATTGGCCCAGTATGGGGCAAAGTTCCTTAACCATAACGAT
CTTTGAGCGGCGTGGGACAT

Downstream 100 bases:

>100_bases
GCGCGGCGATTGCATCGGATTTCCTCTCGCTCTAACCTCCTGACGACACGCCGCTCGATCAATGGAAACTCCTGATGCTG
AAGCCTGTGCTTCGCCGTTT

Product: lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKLGYGAASFATTARWLAVSAMCATVAACGTTQAVPKKKAHGKEYFSESEYGVKASPRVATGNNIPKGGGRYIVGNPYEV
KGKWYYPKEDFAYNKVGVASWYGSAFHGRLTANGEVYDQMHLSAAHPTFPLPSYARVTNLESGSSVIVRVNDRGPYHEGR
IIDLSNKTADMLDLQHSGTGKVRVQYVGRARMDGHDMPYLMASYVPKGSRIPGINPEGQIATGVMVASNSRKITRDQLQS
SEDYETPANVPVPMSATSYAGSTPSARYNAAPALAPGAHVLVAPPAPSANNAPQAFDQMVVLPEIGPMPYERPLSSLALG
YQNEDVKTVTVDLAFDAVMARNDGLTQESILASAKRRQAKFAAR

Sequences:

>Translated_364_residues
MKLGYGAASFATTARWLAVSAMCATVAACGTTQAVPKKKAHGKEYFSESEYGVKASPRVATGNNIPKGGGRYIVGNPYEV
KGKWYYPKEDFAYNKVGVASWYGSAFHGRLTANGEVYDQMHLSAAHPTFPLPSYARVTNLESGSSVIVRVNDRGPYHEGR
IIDLSNKTADMLDLQHSGTGKVRVQYVGRARMDGHDMPYLMASYVPKGSRIPGINPEGQIATGVMVASNSRKITRDQLQS
SEDYETPANVPVPMSATSYAGSTPSARYNAAPALAPGAHVLVAPPAPSANNAPQAFDQMVVLPEIGPMPYERPLSSLALG
YQNEDVKTVTVDLAFDAVMARNDGLTQESILASAKRRQAKFAAR
>Mature_364_residues
MKLGYGAASFATTARWLAVSAMCATVAACGTTQAVPKKKAHGKEYFSESEYGVKASPRVATGNNIPKGGGRYIVGNPYEV
KGKWYYPKEDFAYNKVGVASWYGSAFHGRLTANGEVYDQMHLSAAHPTFPLPSYARVTNLESGSSVIVRVNDRGPYHEGR
IIDLSNKTADMLDLQHSGTGKVRVQYVGRARMDGHDMPYLMASYVPKGSRIPGINPEGQIATGVMVASNSRKITRDQLQS
SEDYETPANVPVPMSATSYAGSTPSARYNAAPALAPGAHVLVAPPAPSANNAPQAFDQMVVLPEIGPMPYERPLSSLALG
YQNEDVKTVTVDLAFDAVMARNDGLTQESILASAKRRQAKFAAR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=200, Percent_Identity=33, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 39084; Mature: 39084

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGYGAASFATTARWLAVSAMCATVAACGTTQAVPKKKAHGKEYFSESEYGVKASPRVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHCCCCCCCCCCCCEE
TGNNIPKGGGRYIVGNPYEVKGKWYYPKEDFAYNKVGVASWYGSAFHGRLTANGEVYDQM
CCCCCCCCCCEEEECCCEEECEEEECCCCCCCCCCCCHHHHCCCCCCCEEECCCCEEEEE
HLSAAHPTFPLPSYARVTNLESGSSVIVRVNDRGPYHEGRIIDLSNKTADMLDLQHSGTG
EEECCCCCCCCCCCHHHEECCCCCEEEEEECCCCCCCCCEEEEECCCCCHHEEEECCCCC
KVRVQYVGRARMDGHDMPYLMASYVPKGSRIPGINPEGQIATGVMVASNSRKITRDQLQS
EEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCC
SEDYETPANVPVPMSATSYAGSTPSARYNAAPALAPGAHVLVAPPAPSANNAPQAFDQMV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCEE
VLPEIGPMPYERPLSSLALGYQNEDVKTVTVDLAFDAVMARNDGLTQESILASAKRRQAK
EECCCCCCCCHHCHHHHHCCCCCCCCEEEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHH
FAAR
HCCC
>Mature Secondary Structure
MKLGYGAASFATTARWLAVSAMCATVAACGTTQAVPKKKAHGKEYFSESEYGVKASPRVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHCCCCCCCCCCCCEE
TGNNIPKGGGRYIVGNPYEVKGKWYYPKEDFAYNKVGVASWYGSAFHGRLTANGEVYDQM
CCCCCCCCCCEEEECCCEEECEEEECCCCCCCCCCCCHHHHCCCCCCCEEECCCCEEEEE
HLSAAHPTFPLPSYARVTNLESGSSVIVRVNDRGPYHEGRIIDLSNKTADMLDLQHSGTG
EEECCCCCCCCCCCHHHEECCCCCEEEEEECCCCCCCCCEEEEECCCCCHHEEEECCCCC
KVRVQYVGRARMDGHDMPYLMASYVPKGSRIPGINPEGQIATGVMVASNSRKITRDQLQS
EEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCC
SEDYETPANVPVPMSATSYAGSTPSARYNAAPALAPGAHVLVAPPAPSANNAPQAFDQMV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCEE
VLPEIGPMPYERPLSSLALGYQNEDVKTVTVDLAFDAVMARNDGLTQESILASAKRRQAK
EECCCCCCCCHHCHHHHHCCCCCCCCEEEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHH
FAAR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]