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The map label for this gene is yciR [C]

Identifier: 209549382

GI number: 209549382

Start: 1833031

End: 1835313

Strand: Reverse

Name: yciR [C]

Synonym: Rleg2_1788

Alternate gene names: 209549382

Gene position: 1835313-1833031 (Counterclockwise)

Preceding gene: 209549383

Following gene: 209549381

Centisome position: 40.44

GC content: 57.03

Gene sequence:

>2283_bases
GTGTCCATCCGCGCCGGCAACCTGATGAAGTTTCGAAGAAATCCAAAGATAGTACGTGGCCTCGCTGCCTCCGCAGCCAG
CCACGCAACCGCATTTGCTCCGGCACTATTTGCGGCAATTATTGCAGTCATTGTCGTCTGGGTCGCAACGAACTGGCGGC
TGGAGCGATCGCTGGCCGAGGAACGTTCGATTGTTGCGGGCGAGCTTGCCACAATATCATCTCGGCTTCAGACGAACCTC
AATAGCAATGTGAAGCTGCTGCAAGGGCTGGCGGCTGGCATCGCAGTCGACCCGGCAATGGGCCAAGACGGATTTTCCAA
GCTTGCCGCGCAGATCCTGCAGCCTGATTCACAATTGCGCAGTTTCGCTGCGGCGCCCGACATGGTGGTCCAGTGGGTTT
ACCCGGAAAAAGGAAACGAAAAGGCCATTGGGCTCGACTACCGAAAGAATGATAAGCAACGGGCTGCGGCGATGCTGGCG
CGCAACACCCACAATATCGTTCTGACAGGGCCGGTGGAACTCGTCCAAGGCGGAACCGCTTTCGTCGTCAGGTGTCCGAT
TTATATGAATGACGGAAAGAGCCAGATCTTTTGGGGTCTGCTCTCCGGAATTGTAGACATTCCAAGGCTTTATGGCGATA
GCGGCCTTGGATCGACCGAACTAGAGGTTGCCATCAGCACGGTGCCGGAGCCAAATTCGCCGAAACAGGTTTTTCTCGGA
AATCTGGAAACTTTTTCGAAGCAGCCGGTCGTGACATCGGTTGACATGGCTTATGGCCGATGGACTTTCGGTGCGGTGCC
CAAGAACGGATGGGGCCAAAATAACGGGATCGGCATTTTTGAGTTTTATGCAAGCCTGTTGGCCCTCTGTGTCGTTGCGC
CGATCATTTGGATCGGCTTCCTGACCAAATCACGCCAAAGAACGATCGAGAAGCTTCGCCTTCACAAGAAGAAGCTCGTT
CGAGCGCGGCAACGGCTGGAATATCTGTCGTTGCACGACGCCCTGACGGGGCTGGCGAACCGACGGTTCGTCGACCAGAT
GATCTCGCAACCACGGAGACCCGATGGCGAAGACTGTCTGATCCTCATTCATATCGACCTCGACCGATTTAAAGAGATCA
ACGATACCAAAGGGCATGCCGGCGGTGACATGGTCCTGCAAACAACCGCTTCGCGCCTCGCCGATTTGACCGGCCCAACC
GACGTCGCGGCTCGGATCGGCGGGGACGAGTTCATCTTCGCCAGATGGAGCGCCAATCCCGAGCCTGAAGCAGCCGAATT
GGCCAAACAGATCGTCGACGCGCTCCAGCAACCCATTCTTATCGACGGGGCGGAGTATGTGGTCGGAGCAAGCGTCGGCG
TTGCCTGGGAGACTGAACCTGCCTCCGGGCGGGATCTCGGTCAGTTGCTTCTCAATGCCGATTTGGCTCTATACGAAGCG
AAGAAGGCGGGCCGCGGCCGCGCGGCCATTTTCACCGAAGAGCTTCGCAGCGCCGCAATCCATTCAAAAGAATTGGCAGA
TGAGTTCAATCAGGCGCTCGACCGCGATGAGCTCGTTGCATTCTTCCAGCCGCAATTCCATGCAGATACGTTGGCTATAT
CAGGCGTCGAGGCCCTCGCCCGCTGGGATCACCCGCGAAAAGGTCTGCTCGGCCCGAACAATTTTCTCGACGCAGCGGAA
AGGCTGGGGCGTAGCGGCGACATGGATAGGCTGATCCTGCACAAGGCCCTGTTCGAGCTGACGAGATGGGACAGCCTGGG
AATGCAGATCCCGCGTGTCTCCGTCAATATATCGGCGCGCCGACTGGCGCAGGCAAATCTGCTCGCCGAACTGTCCGGGC
TTCCCGCAGCGAGGGGTCGCCTCTGTTTCGAGCTGCTCGAGACAATTTCCTTCGACGAGCTTCAGCCTGCCCTCAACGAG
GTCATTCCGGCAATCAAAGCGCTCGGCATTGAAATCGAGATCGACGATTTCGGCACGGAACATGCCAGCATCATCAGTCT
GCTTCGATTTGAGCCGCGACGACTTAAGATCGACCGCGAAATTATCAAGCCGATCATAGCCTCGCCATCACAACGCCGCC
TGGTTTCCTCCATTATCGAAATTGGCCGGTCACAGAATATCGACATTGTCGCCGAGGGCGTGGAGACAATGGAGCACGCG
AAGATCCTGAAAGATCTCGGTTGCCATTTGCTGCAAGGCTACGCTCTGGCGCGGCCAATGACGTCGGAGCAGTTGATCGA
ATTTTGCCGCACGAAGGACAAAGGACTGACGCAGGCAGGCTGA

Upstream 100 bases:

>100_bases
ACTTGGAGATTTCTAAATATCTTAACGCGATACAGGATCGGCTTTTCTCGCAGGCTGGCCGGTTTAGCGTTGCCTTAAAG
AAACTGTGCAAGGATGCACT

Downstream 100 bases:

>100_bases
TGCGATGATGGGCTTGCGAAGCTTCGATCTCATCCCGCCGCAAGCCGCAACGGTGGCGAGGGAATCCTCGTCTGTGCTGA
CCCTCGTCTCGATGGCTGCC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 760; Mature: 759

Protein sequence:

>760_residues
MSIRAGNLMKFRRNPKIVRGLAASAASHATAFAPALFAAIIAVIVVWVATNWRLERSLAEERSIVAGELATISSRLQTNL
NSNVKLLQGLAAGIAVDPAMGQDGFSKLAAQILQPDSQLRSFAAAPDMVVQWVYPEKGNEKAIGLDYRKNDKQRAAAMLA
RNTHNIVLTGPVELVQGGTAFVVRCPIYMNDGKSQIFWGLLSGIVDIPRLYGDSGLGSTELEVAISTVPEPNSPKQVFLG
NLETFSKQPVVTSVDMAYGRWTFGAVPKNGWGQNNGIGIFEFYASLLALCVVAPIIWIGFLTKSRQRTIEKLRLHKKKLV
RARQRLEYLSLHDALTGLANRRFVDQMISQPRRPDGEDCLILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPT
DVAARIGGDEFIFARWSANPEPEAAELAKQIVDALQQPILIDGAEYVVGASVGVAWETEPASGRDLGQLLLNADLALYEA
KKAGRGRAAIFTEELRSAAIHSKELADEFNQALDRDELVAFFQPQFHADTLAISGVEALARWDHPRKGLLGPNNFLDAAE
RLGRSGDMDRLILHKALFELTRWDSLGMQIPRVSVNISARRLAQANLLAELSGLPAARGRLCFELLETISFDELQPALNE
VIPAIKALGIEIEIDDFGTEHASIISLLRFEPRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHA
KILKDLGCHLLQGYALARPMTSEQLIEFCRTKDKGLTQAG

Sequences:

>Translated_760_residues
MSIRAGNLMKFRRNPKIVRGLAASAASHATAFAPALFAAIIAVIVVWVATNWRLERSLAEERSIVAGELATISSRLQTNL
NSNVKLLQGLAAGIAVDPAMGQDGFSKLAAQILQPDSQLRSFAAAPDMVVQWVYPEKGNEKAIGLDYRKNDKQRAAAMLA
RNTHNIVLTGPVELVQGGTAFVVRCPIYMNDGKSQIFWGLLSGIVDIPRLYGDSGLGSTELEVAISTVPEPNSPKQVFLG
NLETFSKQPVVTSVDMAYGRWTFGAVPKNGWGQNNGIGIFEFYASLLALCVVAPIIWIGFLTKSRQRTIEKLRLHKKKLV
RARQRLEYLSLHDALTGLANRRFVDQMISQPRRPDGEDCLILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPT
DVAARIGGDEFIFARWSANPEPEAAELAKQIVDALQQPILIDGAEYVVGASVGVAWETEPASGRDLGQLLLNADLALYEA
KKAGRGRAAIFTEELRSAAIHSKELADEFNQALDRDELVAFFQPQFHADTLAISGVEALARWDHPRKGLLGPNNFLDAAE
RLGRSGDMDRLILHKALFELTRWDSLGMQIPRVSVNISARRLAQANLLAELSGLPAARGRLCFELLETISFDELQPALNE
VIPAIKALGIEIEIDDFGTEHASIISLLRFEPRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHA
KILKDLGCHLLQGYALARPMTSEQLIEFCRTKDKGLTQAG
>Mature_759_residues
SIRAGNLMKFRRNPKIVRGLAASAASHATAFAPALFAAIIAVIVVWVATNWRLERSLAEERSIVAGELATISSRLQTNLN
SNVKLLQGLAAGIAVDPAMGQDGFSKLAAQILQPDSQLRSFAAAPDMVVQWVYPEKGNEKAIGLDYRKNDKQRAAAMLAR
NTHNIVLTGPVELVQGGTAFVVRCPIYMNDGKSQIFWGLLSGIVDIPRLYGDSGLGSTELEVAISTVPEPNSPKQVFLGN
LETFSKQPVVTSVDMAYGRWTFGAVPKNGWGQNNGIGIFEFYASLLALCVVAPIIWIGFLTKSRQRTIEKLRLHKKKLVR
ARQRLEYLSLHDALTGLANRRFVDQMISQPRRPDGEDCLILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPTD
VAARIGGDEFIFARWSANPEPEAAELAKQIVDALQQPILIDGAEYVVGASVGVAWETEPASGRDLGQLLLNADLALYEAK
KAGRGRAAIFTEELRSAAIHSKELADEFNQALDRDELVAFFQPQFHADTLAISGVEALARWDHPRKGLLGPNNFLDAAER
LGRSGDMDRLILHKALFELTRWDSLGMQIPRVSVNISARRLAQANLLAELSGLPAARGRLCFELLETISFDELQPALNEV
IPAIKALGIEIEIDDFGTEHASIISLLRFEPRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHAK
ILKDLGCHLLQGYALARPMTSEQLIEFCRTKDKGLTQAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=425, Percent_Identity=31.7647058823529, Blast_Score=207, Evalue=3e-54,
Organism=Escherichia coli, GI87081921, Length=433, Percent_Identity=26.7898383371824, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=29.5275590551181, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=29.7071129707113, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=29.2181069958848, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI226510982, Length=458, Percent_Identity=24.0174672489083, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1788381, Length=204, Percent_Identity=34.3137254901961, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=25.6916996047431, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=27.5720164609054, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=25.8064516129032, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=154, Percent_Identity=37.6623376623377, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1788849, Length=260, Percent_Identity=28.0769230769231, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=216, Percent_Identity=32.4074074074074, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=35.7575757575758, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87082096, Length=451, Percent_Identity=25.0554323725055, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI145693134, Length=184, Percent_Identity=35.3260869565217, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=37.0588235294118, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=25.7936507936508, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081881, Length=214, Percent_Identity=31.7757009345794, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=30.7228915662651, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI87081977, Length=250, Percent_Identity=28.8, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787262, Length=224, Percent_Identity=27.6785714285714, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=131, Percent_Identity=31.2977099236641, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 83380; Mature: 83249

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50839 CHASE ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRAGNLMKFRRNPKIVRGLAASAASHATAFAPALFAAIIAVIVVWVATNWRLERSLAE
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ERSIVAGELATISSRLQTNLNSNVKLLQGLAAGIAVDPAMGQDGFSKLAAQILQPDSQLR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCCCCCHHHHHHHHHHHCCHHHHH
SFAAAPDMVVQWVYPEKGNEKAIGLDYRKNDKQRAAAMLARNTHNIVLTGPVELVQGGTA
HHHCCCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHHCCCCE
FVVRCPIYMNDGKSQIFWGLLSGIVDIPRLYGDSGLGSTELEVAISTVPEPNSPKQVFLG
EEEECCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCHHEEEC
NLETFSKQPVVTSVDMAYGRWTFGAVPKNGWGQNNGIGIFEFYASLLALCVVAPIIWIGF
CHHHCCCCCCEEEEHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LTKSRQRTIEKLRLHKKKLVRARQRLEYLSLHDALTGLANRRFVDQMISQPRRPDGEDCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
ILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPTDVAARIGGDEFIFARWSANP
EEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCCC
EPEAAELAKQIVDALQQPILIDGAEYVVGASVGVAWETEPASGRDLGQLLLNADLALYEA
CCHHHHHHHHHHHHHHCCEEECCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCHHHHHH
KKAGRGRAAIFTEELRSAAIHSKELADEFNQALDRDELVAFFQPQFHADTLAISGVEALA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHH
RWDHPRKGLLGPNNFLDAAERLGRSGDMDRLILHKALFELTRWDSLGMQIPRVSVNISAR
HCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
RLAQANLLAELSGLPAARGRLCFELLETISFDELQPALNEVIPAIKALGIEIEIDDFGTE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCH
HASIISLLRFEPRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHA
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHH
KILKDLGCHLLQGYALARPMTSEQLIEFCRTKDKGLTQAG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SIRAGNLMKFRRNPKIVRGLAASAASHATAFAPALFAAIIAVIVVWVATNWRLERSLAE
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ERSIVAGELATISSRLQTNLNSNVKLLQGLAAGIAVDPAMGQDGFSKLAAQILQPDSQLR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCCCCCHHHHHHHHHHHCCHHHHH
SFAAAPDMVVQWVYPEKGNEKAIGLDYRKNDKQRAAAMLARNTHNIVLTGPVELVQGGTA
HHHCCCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHHCCCCE
FVVRCPIYMNDGKSQIFWGLLSGIVDIPRLYGDSGLGSTELEVAISTVPEPNSPKQVFLG
EEEECCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCHHEEEC
NLETFSKQPVVTSVDMAYGRWTFGAVPKNGWGQNNGIGIFEFYASLLALCVVAPIIWIGF
CHHHCCCCCCEEEEHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LTKSRQRTIEKLRLHKKKLVRARQRLEYLSLHDALTGLANRRFVDQMISQPRRPDGEDCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
ILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPTDVAARIGGDEFIFARWSANP
EEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCCC
EPEAAELAKQIVDALQQPILIDGAEYVVGASVGVAWETEPASGRDLGQLLLNADLALYEA
CCHHHHHHHHHHHHHHCCEEECCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCHHHHHH
KKAGRGRAAIFTEELRSAAIHSKELADEFNQALDRDELVAFFQPQFHADTLAISGVEALA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHH
RWDHPRKGLLGPNNFLDAAERLGRSGDMDRLILHKALFELTRWDSLGMQIPRVSVNISAR
HCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
RLAQANLLAELSGLPAARGRLCFELLETISFDELQPALNEVIPAIKALGIEIEIDDFGTE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCH
HASIISLLRFEPRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHA
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHH
KILKDLGCHLLQGYALARPMTSEQLIEFCRTKDKGLTQAG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]