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The map label for this gene is ytfH [C]

Identifier: 209549352

GI number: 209549352

Start: 1797185

End: 1797691

Strand: Reverse

Name: ytfH [C]

Synonym: Rleg2_1756

Alternate gene names: 209549352

Gene position: 1797691-1797185 (Counterclockwise)

Preceding gene: 209549353

Following gene: 209549351

Centisome position: 39.61

GC content: 63.51

Gene sequence:

>507_bases
ATGCAGCGGACGAGCTTCAGCCAATTCAAATGCCCGGCAGCGCGCGCGCTCGACAGCGTCGGCGACTGGTGGAGTATCCT
CATCCTGCGCGACGCCTTTCAGGGGATTTCGCGCTTCGACGATTTCCAGAAGAGCCTCGGCGTGGCGCCGAACATCCTAA
CGCGGCGGCTGAAACACCTGACGGATCAGGGGCTGTTCGAACGGCGGCTCTATCATCAGCGCCCTGCCCGCTACGAATAT
CGGCTGACGGACAAGGGCCGCGATTTCTTTCCAGTGCTGATGACGCTGTTTTCCTGGGGAAGCCGGCACATTCCGGAAGA
AGATCTTGCCTTTCTGCTCGGCGACGCCGCCTCCGGCAAAGAGCGCCAGGCGGTGCTGGTCGACGCACGGACCGGCGAAG
AAGTGACTCCCGAAAACACCAGCCTGCTTGCAGGCCCCGCCGCCGATGACGCGGTGCACGAGCGGATCGCCCGCATGCGC
GCCTGGTATCTCGGCATCGACGCATAG

Upstream 100 bases:

>100_bases
CGAATTCGACGTTCGCCGGCGCAGGAAGCGCGATGCTCGCTGACAGCTGTCCTCCATTAGTTACTTGCATGATGATAGTC
ACTGCTGTAGTGACATCACC

Downstream 100 bases:

>100_bases
AGAGGAAAATATCATGGATCGCATCGTCGTCACCGGCATGGGACTTGTCTCGCCGCTCGGCACCGGCGTCGAGCTCGCCT
GGAGGCGCCTTCTTGACGGC

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MQRTSFSQFKCPAARALDSVGDWWSILILRDAFQGISRFDDFQKSLGVAPNILTRRLKHLTDQGLFERRLYHQRPARYEY
RLTDKGRDFFPVLMTLFSWGSRHIPEEDLAFLLGDAASGKERQAVLVDARTGEEVTPENTSLLAGPAADDAVHERIARMR
AWYLGIDA

Sequences:

>Translated_168_residues
MQRTSFSQFKCPAARALDSVGDWWSILILRDAFQGISRFDDFQKSLGVAPNILTRRLKHLTDQGLFERRLYHQRPARYEY
RLTDKGRDFFPVLMTLFSWGSRHIPEEDLAFLLGDAASGKERQAVLVDARTGEEVTPENTSLLAGPAADDAVHERIARMR
AWYLGIDA
>Mature_168_residues
MQRTSFSQFKCPAARALDSVGDWWSILILRDAFQGISRFDDFQKSLGVAPNILTRRLKHLTDQGLFERRLYHQRPARYEY
RLTDKGRDFFPVLMTLFSWGSRHIPEEDLAFLLGDAASGKERQAVLVDARTGEEVTPENTSLLAGPAADDAVHERIARMR
AWYLGIDA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 19186; Mature: 19186

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRTSFSQFKCPAARALDSVGDWWSILILRDAFQGISRFDDFQKSLGVAPNILTRRLKHL
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TDQGLFERRLYHQRPARYEYRLTDKGRDFFPVLMTLFSWGSRHIPEEDLAFLLGDAASGK
HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
ERQAVLVDARTGEEVTPENTSLLAGPAADDAVHERIARMRAWYLGIDA
CCCEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQRTSFSQFKCPAARALDSVGDWWSILILRDAFQGISRFDDFQKSLGVAPNILTRRLKHL
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TDQGLFERRLYHQRPARYEYRLTDKGRDFFPVLMTLFSWGSRHIPEEDLAFLLGDAASGK
HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
ERQAVLVDARTGEEVTPENTSLLAGPAADDAVHERIARMRAWYLGIDA
CCCEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]