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The map label for this gene is rbsC [H]

Identifier: 209400838

GI number: 209400838

Start: 5239049

End: 5240023

Strand: Reverse

Name: rbsC [H]

Synonym: ECH74115_5600

Alternate gene names: 209400838

Gene position: 5240023-5239049 (Counterclockwise)

Preceding gene: 209398733

Following gene: 209397860

Centisome position: 94.04

GC content: 56.41

Gene sequence:

>975_bases
ATGACGACCTCTGCAAAAACCTCTGCCAAAAAAATGCTGATGAGCGATCTGATGCAAACGGTCGGCATCTTGCCCATTTT
GATTCTGATCGTGGCGGTATTTGGCTTTATCACGCCAAACTTTTTTACCGAAAGCAACCTGCTGAATATTACCCGCCAGG
CATCGATCAACATTGTTCTGGCGGCGGGGATGACCTTCATCATTTTGACCGGCGGGATCGATCTTTCCGTGGGTTCGATC
CTCGGCACCACAGCGGTGGCGGCGATGGTCGTCTCCCTTAGCCCTGAGTTCGCCATGCTGTCGATCCCGGCAGCGCTGAT
GCTCGGCCTGCTGCTGGGGCTGTTCAACGGCGCGCTGGTGGCCTTTGCCGGATTGCCACCGTTTATCGTTACGCTTGGCA
CCTATACGGCGCTGCGCGGGGCGGCGTATCTGCTGGCGGACGGCACCACGGTTATCAACTCCAACATTAATTTCGAGTGG
ATAGGCAACAACTATCTCGGGCCGGTCCCATGGCTGGTGGTGATTGCGCTGGCGGTGATCGTGGTGTGCTGGTTTATTCT
GCGCCGCACCACGCTTGGCGTTCATATCTACGCCGTCGGCAGCAATATGCAGGCGGCGCGTCTTACCGGCATTAAGGTCT
GGCTGGTGCTGCTGTTTGTTTATGGCATGAGCGGCCTGCTTTCTGGGCTTGGTGGGATTATGAGCGCCTCACGGCTGTAC
AGCGCCAACGGCAACTTAGGCATGGGTTACGAACTGGATGCCATTGCAGCGGTGATCCTCGGCGGCACCAGTTTTGTCGG
CGGCATCGGCACCATCACCGGCACGCTGGTCGGCGCGCTAATTATCGCCACGCTCAACAATGGCATGACCTTAATGGGCG
TCTCTTACTTCTGGCAACTGGTGATCAAAGGGGCGATGATCATCATTGCGGTGCTGATCGACAAATACCGTACCCGACAC
CATCAAAGTGCATAA

Upstream 100 bases:

>100_bases
GCAGCATTGCCGGTGAGTTAAACGGCAAAAACATCACCCAGGAAAACATTATGACCTTAGCGACTGGCGTCAACGACGCC
CATTCCCAGGCGGTAACCTC

Downstream 100 bases:

>100_bases
ACACATGAGGAATACAGCATGAGATTGAAGCCCTTAGTGACCGCGCTCTGTGCAGGCGCGCTGCTGGCCGCAGCACCGTT
CGCCCAGGCGAAAGAACTGA

Product: ribose transport system permease protein RbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MTTSAKTSAKKMLMSDLMQTVGILPILILIVAVFGFITPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSI
LGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNINFEW
IGNNYLGPVPWLVVIALAVIVVCWFILRRTTLGVHIYAVGSNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLY
SANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAMIIIAVLIDKYRTRH
HQSA

Sequences:

>Translated_324_residues
MTTSAKTSAKKMLMSDLMQTVGILPILILIVAVFGFITPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSI
LGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNINFEW
IGNNYLGPVPWLVVIALAVIVVCWFILRRTTLGVHIYAVGSNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLY
SANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAMIIIAVLIDKYRTRH
HQSA
>Mature_323_residues
TTSAKTSAKKMLMSDLMQTVGILPILILIVAVFGFITPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSIL
GTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNINFEWI
GNNYLGPVPWLVVIALAVIVVCWFILRRTTLGVHIYAVGSNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLYS
ANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAMIIIAVLIDKYRTRHH
QSA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=322, Percent_Identity=41.9254658385093, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=38.109756097561, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1788896, Length=321, Percent_Identity=35.5140186915888, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI145693152, Length=304, Percent_Identity=35.5263157894737, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1789992, Length=367, Percent_Identity=33.5149863760218, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1788471, Length=335, Percent_Identity=36.4179104477612, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI145693214, Length=250, Percent_Identity=39.2, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87082395, Length=325, Percent_Identity=32.9230769230769, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787794, Length=310, Percent_Identity=30.9677419354839, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787793, Length=293, Percent_Identity=32.7645051194539, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34040; Mature: 33909

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSAKTSAKKMLMSDLMQTVGILPILILIVAVFGFITPNFFTESNLLNITRQASINIVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEE
AAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALV
ECCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNINFEWIGNNYLGPVPWLVVIALAVI
HHCCCCHHHHHHHHHHHHHHCEEEEECCCEEEECCCEEEECCCCCCCHHHHHHHHHHHHH
VVCWFILRRTTLGVHIYAVGSNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLY
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
SANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQL
ECCCCCCCCCCHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VIKGAMIIIAVLIDKYRTRHHQSA
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTSAKTSAKKMLMSDLMQTVGILPILILIVAVFGFITPNFFTESNLLNITRQASINIVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEE
AAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALV
ECCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNINFEWIGNNYLGPVPWLVVIALAVI
HHCCCCHHHHHHHHHHHHHHCEEEEECCCEEEECCCEEEECCCCCCCHHHHHHHHHHHHH
VVCWFILRRTTLGVHIYAVGSNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLY
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
SANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQL
ECCCCCCCCCCHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VIKGAMIIIAVLIDKYRTRHHQSA
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]