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The map label for this gene is yibD [C]

Identifier: 209400561

GI number: 209400561

Start: 2751327

End: 2752109

Strand: Reverse

Name: yibD [C]

Synonym: ECH74115_2974

Alternate gene names: 209400561

Gene position: 2752109-2751327 (Counterclockwise)

Preceding gene: 209400008

Following gene: 209396471

Centisome position: 49.39

GC content: 30.27

Gene sequence:

>783_bases
ATGAACAAAGAAACCGTTTCAATAATTATGCCCGTTTACAATGGGGCCAAAACTATAATCTCATCAGTAGAATCAATTAT
ACATCAATCTTATCAAGATTTTGTTTTGTATATCATTGACGATTGTAGCACCGATGATACATTTTCATTAATCAACAGTC
GATACAAAAACAATCAGAAAATAAGAATATTGCGTAACAAGACAAATTTAGGTGTTGCAGAAAGTCGAAATTATGGAATA
GAAATGGCCACGGGGAAATATATTTCTTTTTGTGATGCGGATGATTTGTGGCACGAGAAAAAATTAGAGCGTCAAATCGA
AGTGTTAAATAATGAATGTGTAGATGTGGTATGTTCTAATTATTATGTTATAGATAACAAAAGAAATATTGTTGGCGAAG
TTAATGCTCCTCATGTGATAAATTATAGAAAAATGCTCATGAAAAACTACATAGGGAATTTGACAGGAATCTATAATGCC
AACAAATTGGGTAAGTTTTATCAAAAAAAGATTGGTCACGAGGATTATTTGATGTGGCTGGAAATAATTAATAAAACAAA
TGGTGCTATTTGTATTCAAGATAATCTGGCGTATTACATGCGTTCAAATAATTCACTATCGGGTAATAAAATTAAAGCTG
CAAAATGGACATGGAGTATATATAGAGAACATTTACATTTGTCCTTTCCAAAAACATTATATTATTTTTTATTATATGCT
TCAAATGGAGTCATGAAAAAAATAACACATTCACTATTAAGGAGAAAGGAGACTAAAAAGTGA

Upstream 100 bases:

>100_bases
ATTTCGTACACTGGTAGCGATTAAGCCAGGGGCGGTAGCGTGCATAAATTTTAATGCTTATCAAAACTATTAGCATTAAA
AATATATAAGAAATTCTCAA

Downstream 100 bases:

>100_bases
AGTCAGCGGCTAAGTTGATTTTTTTATTCCTATTTACACTTTATAGTCTCCAGTTGTATGGGGTTATCATAGATGATCGT
ATAACAAATTTTGATACAAA

Product: WbdN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNKETVSIIMPVYNGAKTIISSVESIIHQSYQDFVLYIIDDCSTDDTFSLINSRYKNNQKIRILRNKTNLGVAESRNYGI
EMATGKYISFCDADDLWHEKKLERQIEVLNNECVDVVCSNYYVIDNKRNIVGEVNAPHVINYRKMLMKNYIGNLTGIYNA
NKLGKFYQKKIGHEDYLMWLEIINKTNGAICIQDNLAYYMRSNNSLSGNKIKAAKWTWSIYREHLHLSFPKTLYYFLLYA
SNGVMKKITHSLLRRKETKK

Sequences:

>Translated_260_residues
MNKETVSIIMPVYNGAKTIISSVESIIHQSYQDFVLYIIDDCSTDDTFSLINSRYKNNQKIRILRNKTNLGVAESRNYGI
EMATGKYISFCDADDLWHEKKLERQIEVLNNECVDVVCSNYYVIDNKRNIVGEVNAPHVINYRKMLMKNYIGNLTGIYNA
NKLGKFYQKKIGHEDYLMWLEIINKTNGAICIQDNLAYYMRSNNSLSGNKIKAAKWTWSIYREHLHLSFPKTLYYFLLYA
SNGVMKKITHSLLRRKETKK
>Mature_260_residues
MNKETVSIIMPVYNGAKTIISSVESIIHQSYQDFVLYIIDDCSTDDTFSLINSRYKNNQKIRILRNKTNLGVAESRNYGI
EMATGKYISFCDADDLWHEKKLERQIEVLNNECVDVVCSNYYVIDNKRNIVGEVNAPHVINYRKMLMKNYIGNLTGIYNA
NKLGKFYQKKIGHEDYLMWLEIINKTNGAICIQDNLAYYMRSNNSLSGNKIKAAKWTWSIYREHLHLSFPKTLYYFLLYA
SNGVMKKITHSLLRRKETKK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=90, Percent_Identity=38.8888888888889, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788372, Length=101, Percent_Identity=32.6732673267327, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 30347; Mature: 30347

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKETVSIIMPVYNGAKTIISSVESIIHQSYQDFVLYIIDDCSTDDTFSLINSRYKNNQK
CCCCEEEEEEECCCCHHHHHHHHHHHHHHCHHHEEEEEEECCCCCHHHHHHHHHHCCCCE
IRILRNKTNLGVAESRNYGIEMATGKYISFCDADDLWHEKKLERQIEVLNNECVDVVCSN
EEEEECCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHEEECC
YYVIDNKRNIVGEVNAPHVINYRKMLMKNYIGNLTGIYNANKLGKFYQKKIGHEDYLMWL
EEEEECCCCEEECCCCCEEHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCCHHHHHHH
EIINKTNGAICIQDNLAYYMRSNNSLSGNKIKAAKWTWSIYREHLHLSFPKTLYYFLLYA
HHHHCCCCEEEEECCEEEEEECCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHH
SNGVMKKITHSLLRRKETKK
CCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNKETVSIIMPVYNGAKTIISSVESIIHQSYQDFVLYIIDDCSTDDTFSLINSRYKNNQK
CCCCEEEEEEECCCCHHHHHHHHHHHHHHCHHHEEEEEEECCCCCHHHHHHHHHHCCCCE
IRILRNKTNLGVAESRNYGIEMATGKYISFCDADDLWHEKKLERQIEVLNNECVDVVCSN
EEEEECCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHEEECC
YYVIDNKRNIVGEVNAPHVINYRKMLMKNYIGNLTGIYNANKLGKFYQKKIGHEDYLMWL
EEEEECCCCEEECCCCCEEHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCCHHHHHHH
EIINKTNGAICIQDNLAYYMRSNNSLSGNKIKAAKWTWSIYREHLHLSFPKTLYYFLLYA
HHHHCCCCEEEEECCEEEEEECCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHH
SNGVMKKITHSLLRRKETKK
CCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]