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The map label for this gene is ygeR [H]

Identifier: 209398939

GI number: 209398939

Start: 3841863

End: 3842618

Strand: Reverse

Name: ygeR [H]

Synonym: ECH74115_4155

Alternate gene names: 209398939

Gene position: 3842618-3841863 (Counterclockwise)

Preceding gene: 209400999

Following gene: 209399941

Centisome position: 68.96

GC content: 51.32

Gene sequence:

>756_bases
TTGAGTGCGGGACGCCTGAATAAAAAATCTCTGGGTATCGTGATGTTGTTATCGGTTGGACTGCTTTTGGCGGGCTGTTC
GGGTAGCAAATCATCCGATACAGGAACGTATTCCGGCTCCGTTTACACCGTGAAACGGGGGGATACGCTATATCGTATTT
CGCGCACCACGGGAACCAGCGTAAAAGAGCTGGCGCGACTGAACGGCATTTCCCCCCCTTACACCATTGAAGTTGGTCAG
AAACTAAAACTGGGTGGGGCGAAAAGTAGCAGTAGTACACGTAAATCAACCGCCAAATCAACGACCAAAACCGCATCGGT
TACACCGTCATCAGCGGTACCGAAATCTTCCTGGCCGCCAGTAGGGCAACGTTGTTGGTTATGGCCAACGACAGGGAAAG
TTATCATGCCGTATTCGACAGCAGATGGCGGCAATAAAGGGATTGATATCTCAGCTCCACGGGGTACACCTATTTACGCC
GCGGGTGCAGGAAAGGTGGTGTATGTGGGCAACCAGCTGCGTGGCTACGGTAATCTCATCATGATTAAACACAGTGAAGA
TTACATTACGGCTTACGCCCATAATGACACGATGCTGGTAAATAATGGGCAAAGCGTGAAGGCTGGGCAAAAAATCGCCA
CCATGGGGAGCACGGATGCGGCATCTGTTCGCCTGCATTTCCAGATTCGTTACCGTGCAACGGCAATTGATCCGCTACGT
TACTTGCCGCCTCAGGGCAGCAAGCCAAAATGCTGA

Upstream 100 bases:

>100_bases
CCTCTTTCTCTATTACATCGTTTTTCCAGAAGCAAGAGATTGGGTATCAAGAGGCTGGCTGCTATGATATGGCGTCTTGT
TTTTTAAGCGAGGAAAGATT

Downstream 100 bases:

>100_bases
TGGCGAATTAATCAGCAGTCAGCAGCGCGGCACTTGCTAAGAAGAGCGTAAGGTTTATAATGCCTTACGCATCTCGAAGC
GGGCGTAGTTCAATGGTAGA

Product: peptidase, M23B family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQ
KLKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
YLPPQGSKPKC

Sequences:

>Translated_251_residues
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQ
KLKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
YLPPQGSKPKC
>Mature_250_residues
SAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQK
LKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAA
GAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRY
LPPQGSKPKC

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=251, Percent_Identity=99.601593625498, Blast_Score=503, Evalue=1e-144,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=64.4067796610169, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=33.0708661417323, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081989, Length=112, Percent_Identity=33.9285714285714, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26539; Mature: 26408

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTS
CCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCC
VKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPP
HHHHHHHCCCCCCEEEECCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC
VGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLI
CCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEE
MIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
EEEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEECCHH
YLPPQGSKPKC
HCCCCCCCCCC
>Mature Secondary Structure 
SAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTS
CCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCC
VKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPP
HHHHHHHCCCCCCEEEECCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC
VGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLI
CCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEE
MIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
EEEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEECCHH
YLPPQGSKPKC
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]