Click here to switch to the map view.

The map label for this gene is ygdD

Identifier: 209398748

GI number: 209398748

Start: 3768033

End: 3768428

Strand: Reverse

Name: ygdD

Synonym: ECH74115_4071

Alternate gene names: 209398748

Gene position: 3768428-3768033 (Counterclockwise)

Preceding gene: 209400092

Following gene: 209398340

Centisome position: 67.63

GC content: 54.29

Gene sequence:

>396_bases
ATGACCAGCCGTTTTATGCTGATTTTCGCCGCCATTAGCGGCTTCATTTTTGTGGCACTGGGCGCTTTTGGCGCGCATGT
GTTAAGTAAAACCATGGGGGCCGTTGAGATGGGCTGGATCCAGACCGGCCTCGAATACCAGGCGTTTCATACGCTGGCGA
TCTTAGGTCTGGCGGTGGCAATGCAGCGTCGCATCAGTATCTGGTTTTACTGGAGTAGCGTTTTCCTCGCGTTAGGCACG
GTGCTGTTCAGCGGCAGCCTTTATTGCCTGGCACTGTCCCATCTGCGTTTGTGGGCGTTTGTCACTCCGGTTGGCGGCGT
GAGCTTCCTTGCGGGCTGGGCGTTAATGTTAGTTGGTGCTATCCGTTTAAAGCGCAAGGGCGTAAGTCATGAATAA

Upstream 100 bases:

>100_bases
TAAAATAGCCGCCTTTCGCCAATGGATCCTGGCGAAAGCCGCTGCTGAACAAGAAAAATTCCGCTTTCGTTATGAACAAT
AATTTACGTAGGGTACGACC

Downstream 100 bases:

>100_bases
GGTTGTATTGCTGTGCCGTCCGGGCTTTGAAAAAGAGTGCGCCGCAGAAATTACCGATAAAGCCGGCCAGCGGGAGATTT
TCGGTTTTGCCCGCGTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGT
VLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGAIRLKRKGVSHE

Sequences:

>Translated_131_residues
MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGT
VLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGAIRLKRKGVSHE
>Mature_130_residues
TSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTV
LFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGAIRLKRKGVSHE

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family

Homologues:

Organism=Escherichia coli, GI1789172, Length=131, Percent_Identity=100, Blast_Score=255, Evalue=8e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGDD_ECO57 (P0ADR4)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C91087
- PIR:   E85932
- RefSeq:   NP_289362.1
- RefSeq:   NP_311694.1
- ProteinModelPortal:   P0ADR4
- EnsemblBacteria:   EBESCT00000027939
- EnsemblBacteria:   EBESCT00000059468
- GeneID:   916523
- GeneID:   958274
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4124
- KEGG:   ecs:ECs3667
- GeneTree:   EBGT00050000009752
- HOGENOM:   HBG700524
- OMA:   GPITPMG
- ProtClustDB:   PRK10873
- BioCyc:   ECOL83334:ECS3667-MONOMER
- InterPro:   IPR006696

Pfam domain/function: PF04241 DUF423

EC number: NA

Molecular weight: Translated: 14333; Mature: 14202

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd1cec84)-; HASH(0x10f89ba8)-; HASH(0x11339a44)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHH
MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IRLKRKGVSHE
HHHHHCCCCCH
>Mature Secondary Structure 
TSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHH
MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IRLKRKGVSHE
HHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796