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The map label for this gene is ygiV

Identifier: 209397524

GI number: 209397524

Start: 4011260

End: 4011742

Strand: Reverse

Name: ygiV

Synonym: ECH74115_4332

Alternate gene names: 209397524

Gene position: 4011742-4011260 (Counterclockwise)

Preceding gene: 209397881

Following gene: 209396769

Centisome position: 72.0

GC content: 52.8

Gene sequence:

>483_bases
ATGACAAACCTGACACTGGATGTAAACATTATCGATTTCCCATCAATCCCTGTGGCGATGTTGCCGCACCGCTGTAGGCC
TGAGTTGCTCAACTACAGCGTGGCGAAATTTATCATGTGGCGTAAAGAGACGGGGCTTTCTCCTGTTAACCAAAGCCAGA
CTTTTGGCGTCGCCTGGGACGACCCTGCCACCACCGCACCGGAAGCGTTTCGCTTTGATATCTGCGGCAGCGTTAGCGAA
CCGATTCCCGATAATCGTTATGGTGTGAGCAATGGTGAACTTACCGGTGGACGTTATGCCGTGGCTCGCCACGTTGGCGA
GCTGGACGATATTTCACACACGATATGGGGCATTATTCGCCACTGGCTGCCTGCAAGCGGCGAGAAAATGCGTAAAGCAC
CGATTCTGTTTCACTACACCAATCTTGCCGAAGGGGTGACGGAGCAGCGACTGGAAACGAATGTTTATGTGCCGTTAGCG
TGA

Upstream 100 bases:

>100_bases
AATTCTGTTGAAATTGACGTCAAACAGATCCGCAAAGTAAATCCGTAATTGTTACCGCTCCCGGGATGCGTTCCCGGGAA
TAATTTCGCAGGGAGGCAAC

Downstream 100 bases:

>100_bases
TGGGGAATCTTTACCGGAGTGTGAGCCAAATCACTCGCGATAAGTTTGAGCGAACAATGCCACAGGCGTATTGTTGTTGG
GCTTATAATTTCTCCGGTAA

Product: transcription activator effector binding domain/DNA gyrase inhibitor domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSE
PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPLA

Sequences:

>Translated_160_residues
MTNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSE
PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPLA
>Mature_159_residues
TNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEP
IPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPLA

Specific function: Represses expression of mcbR

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=160, Percent_Identity=98.125, Blast_Score=330, Evalue=2e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGIV_ECO57 (Q8XBS4)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A85962
- PIR:   A98117
- RefSeq:   NP_289598.1
- RefSeq:   NP_311932.1
- ProteinModelPortal:   Q8XBS4
- SMR:   Q8XBS4
- EnsemblBacteria:   EBESCT00000028149
- EnsemblBacteria:   EBESCT00000060038
- GeneID:   916269
- GeneID:   958702
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4375
- KEGG:   ecs:ECs3905
- GeneTree:   EBGT00050000010007
- HOGENOM:   HBG467316
- OMA:   PPRTHAT
- ProtClustDB:   CLSK880552
- BioCyc:   ECOL83334:ECS3905-MONOMER
- GO:   GO:0006350
- InterPro:   IPR010499
- InterPro:   IPR011256
- SMART:   SM00871

Pfam domain/function: PF06445 AraC_E_bind; SSF55136 Bac_reg_effector

EC number: NA

Molecular weight: Translated: 17910; Mature: 17778

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD
CCCEEEEEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIR
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPLA
HHCCCCCCCHHCCCEEEEECCHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure 
TNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD
CCEEEEEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIR
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPLA
HHCCCCCCCHHCCCEEEEECCHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796