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The map label for this gene is ygiS [H]

Identifier: 209396769

GI number: 209396769

Start: 4009544

End: 4011151

Strand: Reverse

Name: ygiS [H]

Synonym: ECH74115_4331

Alternate gene names: 209396769

Gene position: 4011151-4009544 (Counterclockwise)

Preceding gene: 209397524

Following gene: 209398989

Centisome position: 71.99

GC content: 52.36

Gene sequence:

>1608_bases
ATGTATACGCGAAATTTATTATGGCTGGTCAGCCTGGTAAGTGCGGCTCCTCTCTACGCTGCTGACGTTCCCACCAACAC
ACAGCTCGCCCCGCAACAAGTCTTTCGTTACAACAATCATAGCGACCCAGGTACGCTCGACCCGCAAAAGGTGGAGGAGA
ATACTGCCGCGCAGATTGTGCTGGATCTGTTTGAAGGTCTGGTATGGATGGACGGTGAAGGCCAGGTGCAGCCCGCTCAG
GCTGAACGCTGGGAGATACTGGACGGCGGCAGGCGCTATATTTTCCATCTGCGTAGCGGTTTGCAGTGGTCCGACGGTCA
GCCTCTGACGGCAGAGGATTTTGTCCTCGGCTGGCAGCGCGCGGTTGACCCGAAAACGGCAAGCCCTTTTGCTGGCTATC
TGGCACAGGCGCACATTAACAATGCCGCGGCTATTGTTGCGGGTAAAGCAGATGTTACATCGCTGGGTGTCAAAGCGACG
GATGATCGTACTCTTGAAGTTACGCTTGAGCAGCCGGTTCCTTGGTTCACGACGATGCTCGCCTGGCCGACGCTGTTCCC
GGTTCCTCATCATGTCATCGCTAAACATGGCGATAGCTGGAGTAAGCCAGAGAACATGGTTTACAACGGTGCCTTTGTGC
TTGATCAGTGGGTAGTTAACGAAAAGATTACTGCACGCAAAAATCCAAAGTACCGCGATGCGCAACATACAGTATTGCAA
CAGGTTGAGTATCTGGCGCTGGATAATTCGGTCACCGGCTATAACCGCTATCGCGCGGGAGAGGTCGATCTCACCTGGGT
TCCGGCGCAGCAAATTCCCGCCATTGAAAAATCACTGCCTGGCGAGATACGAATTATTCCGCGTCTGAACAGCGAATATT
ACAACTTCAACCTTGAGAAACCGCCATTTAACGATGTGCGAGTGCGTCGGGCGCTATATCTTACGGTTGATCGACAGCTT
ATTGCGCAAAAGGTACTGGGGTTGAGAACGCCCGCAACCACGCTGACGCCGCCAGAGGTAAAAGGCTTTAGCGCGACGAC
GTTCGATGAACTGCAAAAGCCAATGAGTGAGCGCGTCGCGATGGCAAAAGCCTTGCTGAAACAGGCGGGATACGACGCCT
CTCATCCGCTACGCTTTGAGCTGTTCTACAACAAGTACGATCTGCATGAAAAGACCGCGATAGCGTTGTCTTCCGAATGG
AAAAAATGGCTGGGTGCACAGGTGACGCTGCGCACAATGGAGTGGAAAACCTATCTTGATGCCCGACGAGCCGGTGATTT
CATGCTGTCTCGGCAGTCGTGGGATGCGACGTACAATGATGCTTCCAGCTTCCTGAACACGCTCAAAAGCGATAGTGAAG
AAAACGTCGGTCACTGGAAAAATGCGCAGTATGACGCCTTACTAAACCAGGCCATGCAGATCACTGATGCGACAAAGCGT
AATGCGTTGTATCAGCAGGCAGAAGTGATCGTCAACCAGCAGGCACCGCTGATTCCTATCTACTATCAGCCGTTAATCAA
ACTGCTTAAACCCTACGTTGGCGGTTTTCCGCTGCATAATCCCCAGGATTATGTCTACAGCAAAGAGTTGTATATCAAGG
CACATTGA

Upstream 100 bases:

>100_bases
CTTTACCGGAGTGTGAGCCAAATCACTCGCGATAAGTTTGAGCGAACAATGCCACAGGCGTATTGTTGTTGGGCTTATAA
TTTCTCCGGTAAGGAATACC

Downstream 100 bases:

>100_bases
TGCCTTTATCGCCGTCGGAGCACGTCCGGCGGCGCTATTCACGCTGATCTCCTGTGACTCGACGCGGCAGATAATGTAGT
ATCTCCGGCAATATTGCCCC

Product: putative binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MYTRNLLWLVSLVSAAPLYAADVPTNTQLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQ
AERWEILDGGRRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKAT
DDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQ
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGEIRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQL
IAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEW
KKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQAMQITDATKR
NALYQQAEVIVNQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH

Sequences:

>Translated_535_residues
MYTRNLLWLVSLVSAAPLYAADVPTNTQLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQ
AERWEILDGGRRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKAT
DDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQ
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGEIRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQL
IAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEW
KKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQAMQITDATKR
NALYQQAEVIVNQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH
>Mature_535_residues
MYTRNLLWLVSLVSAAPLYAADVPTNTQLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQ
AERWEILDGGRRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKAT
DDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQ
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGEIRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQL
IAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEW
KKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQAMQITDATKR
NALYQQAEVIVNQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=535, Percent_Identity=98.8785046728972, Blast_Score=1092, Evalue=0.0,
Organism=Escherichia coli, GI1787495, Length=530, Percent_Identity=43.9622641509434, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI87081878, Length=529, Percent_Identity=42.5330812854442, Blast_Score=406, Evalue=1e-114,
Organism=Escherichia coli, GI1789966, Length=512, Percent_Identity=25.9765625, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1787052, Length=491, Percent_Identity=24.2362525458248, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1787762, Length=529, Percent_Identity=24.1965973534972, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789887, Length=486, Percent_Identity=23.8683127572016, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787551, Length=528, Percent_Identity=22.9166666666667, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60800; Mature: 60800

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTRNLLWLVSLVSAAPLYAADVPTNTQLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIV
CCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
LDLFEGLVWMDGEGQVQPAQAERWEILDGGRRYIFHLRSGLQWSDGQPLTAEDFVLGWQR
HHHHHCEEEECCCCCCCCCCCCCCEECCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHH
AVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTML
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHCCEEECCCCEEEEEECCCCCHHHHHH
AWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQ
HHHHHCCCCHHHHHCCCCCCCCCCCEEECCEEEEEHHHHCCCHHCCCCCCCCHHHHHHHH
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGEIRIIPRLNSEYYNFNLEK
HHHHHHCCCCCCCCCCEECCCEEEEEECHHHCCHHHHCCCCCEEEEEECCCCEEEEECCC
PPFNDVRVRRALYLTVDRQLIAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVA
CCCCHHHEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
MAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLD
HHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHEEEHHHHHHHHCCCEEEEEEEHHHHHHH
ARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQAMQITDATKR
HHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
NALYQQAEVIVNQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH
HHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MYTRNLLWLVSLVSAAPLYAADVPTNTQLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIV
CCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
LDLFEGLVWMDGEGQVQPAQAERWEILDGGRRYIFHLRSGLQWSDGQPLTAEDFVLGWQR
HHHHHCEEEECCCCCCCCCCCCCCEECCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHH
AVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTML
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHCCEEECCCCEEEEEECCCCCHHHHHH
AWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQ
HHHHHCCCCHHHHHCCCCCCCCCCCEEECCEEEEEHHHHCCCHHCCCCCCCCHHHHHHHH
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGEIRIIPRLNSEYYNFNLEK
HHHHHHCCCCCCCCCCEECCCEEEEEECHHHCCHHHHCCCCCEEEEEECCCCEEEEECCC
PPFNDVRVRRALYLTVDRQLIAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVA
CCCCHHHEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
MAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLD
HHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHEEEHHHHHHHHCCCEEEEEEEHHHHHHH
ARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQAMQITDATKR
HHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
NALYQQAEVIVNQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH
HHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]