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The map label for this gene is PhnF [H]

Identifier: 20806969

GI number: 20806969

Start: 474906

End: 475631

Strand: Direct

Name: PhnF [H]

Synonym: TTE0461

Alternate gene names: 20806969

Gene position: 474906-475631 (Clockwise)

Preceding gene: 20806968

Following gene: 20806970

Centisome position: 17.66

GC content: 38.43

Gene sequence:

>726_bases
ATGTTATTGCCTGAGAAAAAGCCGCTGTATGAGCTTGCTTTAAAAAAGATGGAGGAACTTATAAAGACGGGACAATGGAA
GGAAGGCAGTAAACTTCCTTCTGAGTCCCAGCTTGCAAAACAGTTTGGCATAAGCAGAGCCACTTTGAGAGAAGCTATGA
GGATTCTGGAAGAGGAAGGATTAATTGTAAAGCAGCAAGGGGTCGGTACTTTTGTGAGAAGAAAACCGCTCATAAAAAGC
GGTTTGGAGGAGTTGTTCAGCGTTACTGCTTTAATTGAAAGGCAGGGAATGGTGCCTGGTACCAAAGATTTTACTGTGTA
TAAATTGCCTGCAACTGAGAATGAAGCAAAGCATTTGAGGATAAAGCCGGGGGATATAATATACAAAGTAGAGAGAATTA
GGACGGCTGACAATGTTCCTGTTGTTTACTGCATAGATAGATTGCCAGAGAACATCGTAGGAGAGTCTTTTACCGGATTT
GAACAGTCAATTTTTAGTTATCTTGAGGCAGAGCATTCTATAAGAATTACTTATGCTATTTCCCACATCAGAGTTATAAA
GCACGACCCTGTAGTTGAGAAAAAGCTCATGATGGACAAAAACGATTCGATATTGCTTTTAGAACAAGTTCATTATGATG
AAAATAACACGCCAATTTTGTTTTCGTCAAATTATTTTAATGCCTCTAAATTTGACTTTTACATTGTCAGAAAAAGAACA
TTGTGA

Upstream 100 bases:

>100_bases
CAATTCTTGCACTTGTAGGTATTGGAGGTAAGAGTGTACCACCTGCTGCTGATGGTGTGCCTTACACACCTAAAAAGTAA
AAATAAAAGGGGCGTTTGTC

Downstream 100 bases:

>100_bases
AAGTAGGTGTGTAAATGGAGTACAGGGACTATGAAAAACTAATAGAAATTGCAAAAGAAGCGAGGGAAAATGCTTACGCT
CCTTACTCTAATTTTAAAGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLLPEKKPLYELALKKMEELIKTGQWKEGSKLPSESQLAKQFGISRATLREAMRILEEEGLIVKQQGVGTFVRRKPLIKS
GLEELFSVTALIERQGMVPGTKDFTVYKLPATENEAKHLRIKPGDIIYKVERIRTADNVPVVYCIDRLPENIVGESFTGF
EQSIFSYLEAEHSIRITYAISHIRVIKHDPVVEKKLMMDKNDSILLLEQVHYDENNTPILFSSNYFNASKFDFYIVRKRT
L

Sequences:

>Translated_241_residues
MLLPEKKPLYELALKKMEELIKTGQWKEGSKLPSESQLAKQFGISRATLREAMRILEEEGLIVKQQGVGTFVRRKPLIKS
GLEELFSVTALIERQGMVPGTKDFTVYKLPATENEAKHLRIKPGDIIYKVERIRTADNVPVVYCIDRLPENIVGESFTGF
EQSIFSYLEAEHSIRITYAISHIRVIKHDPVVEKKLMMDKNDSILLLEQVHYDENNTPILFSSNYFNASKFDFYIVRKRT
L
>Mature_241_residues
MLLPEKKPLYELALKKMEELIKTGQWKEGSKLPSESQLAKQFGISRATLREAMRILEEEGLIVKQQGVGTFVRRKPLIKS
GLEELFSVTALIERQGMVPGTKDFTVYKLPATENEAKHLRIKPGDIIYKVERIRTADNVPVVYCIDRLPENIVGESFTGF
EQSIFSYLEAEHSIRITYAISHIRVIKHDPVVEKKLMMDKNDSILLLEQVHYDENNTPILFSSNYFNASKFDFYIVRKRT
L

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=216, Percent_Identity=26.8518518518519, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788418, Length=233, Percent_Identity=23.6051502145923, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786950, Length=239, Percent_Identity=25.9414225941423, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786303, Length=59, Percent_Identity=50.8474576271186, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27793; Mature: 27793

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPEKKPLYELALKKMEELIKTGQWKEGSKLPSESQLAKQFGISRATLREAMRILEEEG
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
LIVKQQGVGTFVRRKPLIKSGLEELFSVTALIERQGMVPGTKDFTVYKLPATENEAKHLR
CEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEE
IKPGDIIYKVERIRTADNVPVVYCIDRLPENIVGESFTGFEQSIFSYLEAEHSIRITYAI
ECCCCEEEEEEHHHCCCCCCEEEEHHHCCHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEE
SHIRVIKHDPVVEKKLMMDKNDSILLLEQVHYDENNTPILFSSNYFNASKFDFYIVRKRT
EEEEEECCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEECC
L
C
>Mature Secondary Structure
MLLPEKKPLYELALKKMEELIKTGQWKEGSKLPSESQLAKQFGISRATLREAMRILEEEG
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
LIVKQQGVGTFVRRKPLIKSGLEELFSVTALIERQGMVPGTKDFTVYKLPATENEAKHLR
CEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEE
IKPGDIIYKVERIRTADNVPVVYCIDRLPENIVGESFTGFEQSIFSYLEAEHSIRITYAI
ECCCCEEEEEEHHHCCCCCCEEEEHHHCCHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEE
SHIRVIKHDPVVEKKLMMDKNDSILLLEQVHYDENNTPILFSSNYFNASKFDFYIVRKRT
EEEEEECCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEECC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]