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The map label for this gene is vlp-c [H]

Identifier: 203283924

GI number: 203283924

Start: 11274

End: 12344

Strand: Direct

Name: vlp-c [H]

Synonym: BDU_15012

Alternate gene names: 203283924

Gene position: 11274-12344 (Clockwise)

Preceding gene: 203283923

Following gene: 203283925

Centisome position: 74.92

GC content: 38.75

Gene sequence:

>1071_bases
ATGAATAAAGAGAAAAAAGGAGAGGGGAAAGTAAGAGTAATATTATTGATGATGATGATGGTGATGATGGGATGTAATAG
TGGGGTATTAGAAGCAGAGCAAGGGAAGAATAAATATTTGCAGTCATTAGTTAATGTAAGTAATGAATTTTTAAATGTTT
TCACTTCATTTGGGGAAATGGTGGGGAGTGTATTGGGATTGAATTTGGAGAGTAAGAAATCGGATGTAGGGAAGTATTTT
AAGACAGTGCAGGATACAGTAGAAGAAGTTAAAACAGGACTTAATAAGATTGTTGCTGAAATGAAGGAAGAAAAGAGTCC
TAATGTTGAGGCCACTGAGAGTGCAGTGAAAACATTGGTTGAGAGTACACTTGATAAGATAATAGCTGGAGCAAAGGAGG
CAAGTGAGGCAATTGGTACTGATGATAGTCCAATTGGTAATATTGCTACTGCTGGTGATGCTGCTGGTGGTGCTGCAGGT
GAGATTGATAAACTAGTAAAGGGAATTAAGAGTATAGTAGAAGTAGTACTTAAAGATTCAGGAAAACATGATGCTGGGGA
TGATAAAAAGGCAAGTGATGGGAGTACTTCAAGAACTGGGGGAGCTGCTCAGGATGGAGAAGCAGGGAAATTGTTCTCTT
CTGCTAATGCTGGTGATCAAAATAATGTTAAGAAAGTGGCAACAGATGCAGCAAAGGCAGTAGGAGGAGTAAGAGGAGCA
GATATATTGCAAGCTATGATTAAAAATGAAGGTGTTGCTATAAAGTTTGCAAAGAGTAATGATGGTAATGCTGGTGCTGC
TCCTAAAGATGCGGAAGTGGCAGGTGGAATAGCATTGAGAGCGATGGCAAAAGGTGGTAAATTTGCTAATGGTACTGCTG
GTAATGATGTTTCAGCTGCAGTTAAAGGAGCAGCAGTAAGTTCAGTAAGTAAGGCATTAGATATATTGACAATAGGAATA
AGAAGAGCAATAGACTTGGGACTTAAGAGTGTCAAAGAAGTAATGAAAACTAATACTGGTGCTACTGCTATGGCATCTGG
TAAGATTGGTTCTGGTAGTCAAAATCAATAA

Upstream 100 bases:

>100_bases
TTGTCATTTATTCATTTATTCATCGTTGTATTCATTTTTTATGTCTTACTAAGATTTAAAGAAAAGCTAAAAAGAAATAA
AAAATAAGGAGGCTAGAAGA

Downstream 100 bases:

>100_bases
TCAGAATACATAACTAAATAATAAAATAAGAGAAAAATTATAAATTAAAGATGCTAGGAATTAAGTTCTTGGTATCTTTT
ATTTTGTAGTGTATTAGACA

Product: vlp protein, gamma subfamily

Products: NA

Alternate protein names: Fragment [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MNKEKKGEGKVRVILLMMMMVMMGCNSGVLEAEQGKNKYLQSLVNVSNEFLNVFTSFGEMVGSVLGLNLESKKSDVGKYF
KTVQDTVEEVKTGLNKIVAEMKEEKSPNVEATESAVKTLVESTLDKIIAGAKEASEAIGTDDSPIGNIATAGDAAGGAAG
EIDKLVKGIKSIVEVVLKDSGKHDAGDDKKASDGSTSRTGGAAQDGEAGKLFSSANAGDQNNVKKVATDAAKAVGGVRGA
DILQAMIKNEGVAIKFAKSNDGNAGAAPKDAEVAGGIALRAMAKGGKFANGTAGNDVSAAVKGAAVSSVSKALDILTIGI
RRAIDLGLKSVKEVMKTNTGATAMASGKIGSGSQNQ

Sequences:

>Translated_356_residues
MNKEKKGEGKVRVILLMMMMVMMGCNSGVLEAEQGKNKYLQSLVNVSNEFLNVFTSFGEMVGSVLGLNLESKKSDVGKYF
KTVQDTVEEVKTGLNKIVAEMKEEKSPNVEATESAVKTLVESTLDKIIAGAKEASEAIGTDDSPIGNIATAGDAAGGAAG
EIDKLVKGIKSIVEVVLKDSGKHDAGDDKKASDGSTSRTGGAAQDGEAGKLFSSANAGDQNNVKKVATDAAKAVGGVRGA
DILQAMIKNEGVAIKFAKSNDGNAGAAPKDAEVAGGIALRAMAKGGKFANGTAGNDVSAAVKGAAVSSVSKALDILTIGI
RRAIDLGLKSVKEVMKTNTGATAMASGKIGSGSQNQ
>Mature_356_residues
MNKEKKGEGKVRVILLMMMMVMMGCNSGVLEAEQGKNKYLQSLVNVSNEFLNVFTSFGEMVGSVLGLNLESKKSDVGKYF
KTVQDTVEEVKTGLNKIVAEMKEEKSPNVEATESAVKTLVESTLDKIIAGAKEASEAIGTDDSPIGNIATAGDAAGGAAG
EIDKLVKGIKSIVEVVLKDSGKHDAGDDKKASDGSTSRTGGAAQDGEAGKLFSSANAGDQNNVKKVATDAAKAVGGVRGA
DILQAMIKNEGVAIKFAKSNDGNAGAAPKDAEVAGGIALRAMAKGGKFANGTAGNDVSAAVKGAAVSSVSKALDILTIGI
RRAIDLGLKSVKEVMKTNTGATAMASGKIGSGSQNQ

Specific function: The vlp and vsp proteins are antigenically distinct proteins, only one vlp or vsp gene is transcriptionally active at any one time. Switching between these genes is a mechanism of host immune reponse evasion [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the variable large protein (vlp) family. Gamma subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000680
- InterPro:   IPR001800 [H]

Pfam domain/function: PF00921 Lipoprotein_2; PF01441 Lipoprotein_6 [H]

EC number: NA

Molecular weight: Translated: 36304; Mature: 36304

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEKKGEGKVRVILLMMMMVMMGCNSGVLEAEQGKNKYLQSLVNVSNEFLNVFTSFGEM
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGSVLGLNLESKKSDVGKYFKTVQDTVEEVKTGLNKIVAEMKEEKSPNVEATESAVKTLV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ESTLDKIIAGAKEASEAIGTDDSPIGNIATAGDAAGGAAGEIDKLVKGIKSIVEVVLKDS
HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
GKHDAGDDKKASDGSTSRTGGAAQDGEAGKLFSSANAGDQNNVKKVATDAAKAVGGVRGA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHH
DILQAMIKNEGVAIKFAKSNDGNAGAAPKDAEVAGGIALRAMAKGGKFANGTAGNDVSAA
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
VKGAAVSSVSKALDILTIGIRRAIDLGLKSVKEVMKTNTGATAMASGKIGSGSQNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MNKEKKGEGKVRVILLMMMMVMMGCNSGVLEAEQGKNKYLQSLVNVSNEFLNVFTSFGEM
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGSVLGLNLESKKSDVGKYFKTVQDTVEEVKTGLNKIVAEMKEEKSPNVEATESAVKTLV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ESTLDKIIAGAKEASEAIGTDDSPIGNIATAGDAAGGAAGEIDKLVKGIKSIVEVVLKDS
HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
GKHDAGDDKKASDGSTSRTGGAAQDGEAGKLFSSANAGDQNNVKKVATDAAKAVGGVRGA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHH
DILQAMIKNEGVAIKFAKSNDGNAGAAPKDAEVAGGIALRAMAKGGKFANGTAGNDVSAA
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
VKGAAVSSVSKALDILTIGIRRAIDLGLKSVKEVMKTNTGATAMASGKIGSGSQNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA