Click here to switch to the map view.

The map label for this gene is ycbY [C]

Identifier: 20094405

GI number: 20094405

Start: 928424

End: 929482

Strand: Direct

Name: ycbY [C]

Synonym: MK0969

Alternate gene names: 20094405

Gene position: 928424-929482 (Clockwise)

Preceding gene: 20094404

Following gene: 20094407

Centisome position: 54.78

GC content: 63.93

Gene sequence:

>1059_bases
TTGACCTCGGGAGTACTGTGCACGACCGCTCCGGGCCTCGAGGACGTCTGTGCCCAGGAACTCGGCGAGATCACCGGAAA
ATCCGTGCGTGAGAACTACCTCGGCGTACGCGGTCGCGTGCTCGTGGAGTGCTCGGAGCACGAGGCCCTCGACCTCGCCC
GTGAGATCAATCGCAGATCCCTTACCGTCCACCGAGCCGCGGTTCTCCTGGGCGGCTTTGAGATCGAGCACCGCGACGAG
CGTGGCCTCGAGGAGATACGTGAGCGCTGCCGGGAACTACCTTTCGAGCGTTACATCCACGAACACGATACGTTCGGTGT
ACGGCCATCGCGGCTCGGAGAGCATGATTTCACCAGCGTGGATGTGGGGGCCGCCGTCGGCGATGCCGTCATCGAGCGGA
TAAAGAGGGAGGAGGGATTCAGACCTCAGGTGGATCTCGACGCGCCCTCGGTGATCGTCAGGGCCGACGTCGTGGGAGAC
ACCGTCATCGTCGGAGTCTGTACGACCGGTGACCGCTCCCTCCACCAGCGCGGTTACAGGGTATACGACCATCCGGCGGC
GCTCAACCCCGTGATCGCTCAAGGCATGCTGGAGCTGGCCGGGGACCCGGACTCTCTCATCGATCCCACCTGCGGTGGCG
CCACGGTGCCCATAGAGGCCCTACTCAGGGACCCGGAGACGGAGGCCGTAGGTGTGGAGAAGTTTCGAACGCATTACGAG
GGAGCCCGCCTCAACGTCCTGGCCGCCAGAGTCGACGTGGAGCTCTATCTGGCGGACGCGACTCGACTGTTCGAGGAGGT
TCCGGAGCTCCGAGATCGCGAGTTCGACGCCGCCGTCTTCAACCCTCCGTACGGCCTCAAGATAGCGAACCCGCGCGTCG
TGAAGACGCTCTACCGAGGTCTCGCGCGCGTTCTCTCGGATCTCGTCAGTGTCGTCGTGACGGTGACGCCACGTGACGGT
TGGATGCGGGCGGCGATGGAGGAGTACGGGTTCAGGTTGAGCCACGATCGCTGGGTGAGGCACGGTGGTCTAGACGTGAG
GCTCCTAGTCTTTCGCTAA

Upstream 100 bases:

>100_bases
CCGTCGTCGTCGACGCGGGTCTCGCCAGGGAGGATGAGATAGGGGAGCTGGGAGGGGTCCCACACGTCCAGATCTACATC
CTCCCGCGGGAGCCGTTCCT

Downstream 100 bases:

>100_bases
CTCCCTGACGACGTCCAGTAGCTCCCGTGGCCTGTCGATTTCGAAGTCCGGAACATCGTCGTCGTTTCTCGGCTCCATAT
CCTGGTATTTGCCCCTCCGG

Product: N6-adenine-specific RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MTSGVLCTTAPGLEDVCAQELGEITGKSVRENYLGVRGRVLVECSEHEALDLAREINRRSLTVHRAAVLLGGFEIEHRDE
RGLEEIRERCRELPFERYIHEHDTFGVRPSRLGEHDFTSVDVGAAVGDAVIERIKREEGFRPQVDLDAPSVIVRADVVGD
TVIVGVCTTGDRSLHQRGYRVYDHPAALNPVIAQGMLELAGDPDSLIDPTCGGATVPIEALLRDPETEAVGVEKFRTHYE
GARLNVLAARVDVELYLADATRLFEEVPELRDREFDAAVFNPPYGLKIANPRVVKTLYRGLARVLSDLVSVVVTVTPRDG
WMRAAMEEYGFRLSHDRWVRHGGLDVRLLVFR

Sequences:

>Translated_352_residues
MTSGVLCTTAPGLEDVCAQELGEITGKSVRENYLGVRGRVLVECSEHEALDLAREINRRSLTVHRAAVLLGGFEIEHRDE
RGLEEIRERCRELPFERYIHEHDTFGVRPSRLGEHDFTSVDVGAAVGDAVIERIKREEGFRPQVDLDAPSVIVRADVVGD
TVIVGVCTTGDRSLHQRGYRVYDHPAALNPVIAQGMLELAGDPDSLIDPTCGGATVPIEALLRDPETEAVGVEKFRTHYE
GARLNVLAARVDVELYLADATRLFEEVPELRDREFDAAVFNPPYGLKIANPRVVKTLYRGLARVLSDLVSVVVTVTPRDG
WMRAAMEEYGFRLSHDRWVRHGGLDVRLLVFR
>Mature_351_residues
TSGVLCTTAPGLEDVCAQELGEITGKSVRENYLGVRGRVLVECSEHEALDLAREINRRSLTVHRAAVLLGGFEIEHRDER
GLEEIRERCRELPFERYIHEHDTFGVRPSRLGEHDFTSVDVGAAVGDAVIERIKREEGFRPQVDLDAPSVIVRADVVGDT
VIVGVCTTGDRSLHQRGYRVYDHPAALNPVIAQGMLELAGDPDSLIDPTCGGATVPIEALLRDPETEAVGVEKFRTHYEG
ARLNVLAARVDVELYLADATRLFEEVPELRDREFDAAVFNPPYGLKIANPRVVKTLYRGLARVLSDLVSVVVTVTPRDGW
MRAAMEEYGFRLSHDRWVRHGGLDVRLLVFR

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 39227; Mature: 39096

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGVLCTTAPGLEDVCAQELGEITGKSVRENYLGVRGRVLVECSEHEALDLAREINRRS
CCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
LTVHRAAVLLGGFEIEHRDERGLEEIRERCRELPFERYIHEHDTFGVRPSRLGEHDFTSV
HHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCHHHCCCCCCCCC
DVGAAVGDAVIERIKREEGFRPQVDLDAPSVIVRADVVGDTVIVGVCTTGDRSLHQRGYR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCHHHHHCCCE
VYDHPAALNPVIAQGMLELAGDPDSLIDPTCGGATVPIEALLRDPETEAVGVEKFRTHYE
EECCCCCCCHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCC
GARLNVLAARVDVELYLADATRLFEEVPELRDREFDAAVFNPPYGLKIANPRVVKTLYRG
CCEEEEEEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCEEECCCCCCEECCHHHHHHHHHH
LARVLSDLVSVVVTVTPRDGWMRAAMEEYGFRLSHDRWVRHGGLDVRLLVFR
HHHHHHHHHHHEEEECCCCHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEC
>Mature Secondary Structure 
TSGVLCTTAPGLEDVCAQELGEITGKSVRENYLGVRGRVLVECSEHEALDLAREINRRS
CCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
LTVHRAAVLLGGFEIEHRDERGLEEIRERCRELPFERYIHEHDTFGVRPSRLGEHDFTSV
HHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCHHHCCCCCCCCC
DVGAAVGDAVIERIKREEGFRPQVDLDAPSVIVRADVVGDTVIVGVCTTGDRSLHQRGYR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCHHHHHCCCE
VYDHPAALNPVIAQGMLELAGDPDSLIDPTCGGATVPIEALLRDPETEAVGVEKFRTHYE
EECCCCCCCHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCC
GARLNVLAARVDVELYLADATRLFEEVPELRDREFDAAVFNPPYGLKIANPRVVKTLYRG
CCEEEEEEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCEEECCCCCCEECCHHHHHHHHHH
LARVLSDLVSVVVTVTPRDGWMRAAMEEYGFRLSHDRWVRHGGLDVRLLVFR
HHHHHHHHHHHEEEECCCCHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]