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The map label for this gene is 20093887

Identifier: 20093887

GI number: 20093887

Start: 419733

End: 420248

Strand: Direct

Name: 20093887

Synonym: MK0449

Alternate gene names: NA

Gene position: 419733-420248 (Clockwise)

Preceding gene: 20093884

Following gene: 20093893

Centisome position: 24.76

GC content: 61.24

Gene sequence:

>516_bases
TTGGAAGAGCGAATCAGATGCGAGATATGCGGACGCGTGATCAACGGTCGACCTAAGGTCGTGAAGGTGGAAGGATCGGA
ACTGCGGGTGTGCGAGGAGTGTGCCAAGTTCGGTCGTGAGGTGGTCAAGCCGCGACCTCGCCGTGAGACCGGACGGGTGC
AGCGTGAGCGCCGCCCACGGCGCAGACCCACCGGCGCGAGACGAAGACCGAGAGGGTTCGATCCCTTCAGCGAGGGGCTG
GAGGTAGTTCCGGATTACGACGAGCGTGTCCGCGAGGCTAGGGAACGTAGAGGTTGGAGCCAGGAGGACCTAGCCAAGAA
GATCGGAGAGAAGGTTTCGGTGATCCGGCGTATTGAATCGGGCAAGATGGAACCGGACGTCGAGCTGGCGCGCAAGCTGG
AGAGGGTCCTGGAAATAGAGCTCCTAGAGCGGGTGAGTGAAGAGGACACCGGATCCGTGGGGATCGGGAGCGGCGAGCTG
ACGCTGGGTGATGTAGTGGAGATTAGGAAGAAGTGA

Upstream 100 bases:

>100_bases
TGTCGGCAAGTCGGTTCCCCCGTCAGCTCGGGACCGGCATCCTTATTTGGGTTCTTCATTCCGGATAGCCTGCGACACTT
GCCCTCGGAGGGGTAGTCCG

Downstream 100 bases:

>100_bases
GCGTTACACCGGAGACGTGCGAAGTATCAGCGTAACCACGACGATCGCTAGGGCAACCGAGACCAGGGCGAATCCGTAAG
TTCGAATGTCGATGTGCGCG

Product: transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MEERIRCEICGRVINGRPKVVKVEGSELRVCEECAKFGREVVKPRPRRETGRVQRERRPRRRPTGARRRPRGFDPFSEGL
EVVPDYDERVREARERRGWSQEDLAKKIGEKVSVIRRIESGKMEPDVELARKLERVLEIELLERVSEEDTGSVGIGSGEL
TLGDVVEIRKK

Sequences:

>Translated_171_residues
MEERIRCEICGRVINGRPKVVKVEGSELRVCEECAKFGREVVKPRPRRETGRVQRERRPRRRPTGARRRPRGFDPFSEGL
EVVPDYDERVREARERRGWSQEDLAKKIGEKVSVIRRIESGKMEPDVELARKLERVLEIELLERVSEEDTGSVGIGSGEL
TLGDVVEIRKK
>Mature_171_residues
MEERIRCEICGRVINGRPKVVKVEGSELRVCEECAKFGREVVKPRPRRETGRVQRERRPRRRPTGARRRPRGFDPFSEGL
EVVPDYDERVREARERRGWSQEDLAKKIGEKVSVIRRIESGKMEPDVELARKLERVLEIELLERVSEEDTGSVGIGSGEL
TLGDVVEIRKK

Specific function: Unknown

COG id: COG1813

COG function: function code K; Predicted transcription factor, homolog of eukaryotic MBF1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004451
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 19804; Mature: 19804

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEERIRCEICGRVINGRPKVVKVEGSELRVCEECAKFGREVVKPRPRRETGRVQRERRPR
CCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
RRPTGARRRPRGFDPFSEGLEVVPDYDERVREARERRGWSQEDLAKKIGEKVSVIRRIES
CCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
GKMEPDVELARKLERVLEIELLERVSEEDTGSVGIGSGELTLGDVVEIRKK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MEERIRCEICGRVINGRPKVVKVEGSELRVCEECAKFGREVVKPRPRRETGRVQRERRPR
CCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
RRPTGARRRPRGFDPFSEGLEVVPDYDERVREARERRGWSQEDLAKKIGEKVSVIRRIES
CCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
GKMEPDVELARKLERVLEIELLERVSEEDTGSVGIGSGELTLGDVVEIRKK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]