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The map label for this gene is gatC

Identifier: 197120004

GI number: 197120004

Start: 4167556

End: 4167843

Strand: Direct

Name: gatC

Synonym: Gbem_3643

Alternate gene names: 197120004

Gene position: 4167556-4167843 (Clockwise)

Preceding gene: 308535380

Following gene: 197120005

Centisome position: 90.3

GC content: 64.24

Gene sequence:

>288_bases
ATGAAGATCACAAGAGAACAGGTGGAGCATGTGGCGCGGCTCGCCCGGCTGGAGCTTTCCGAAGCCGAGCTGGACACCTT
CACCGGGCAGATGGACTCGATACTTTCCTACGTGGAGAAGCTGAACGCACTGGACACCGAGGGGATCGTGCCGACCTCCC
ACGCGGTCCCGATGGAGAACGCCTTCAGGGCGGACGAGGCGACCGGCTCGATCGGCGTCGAGGCGGCCCTGGCCAACGCC
CCCCTGCGCGCCCAGAGCTTCTTCAGGGTTCCCAAGGTCATCGAGTAA

Upstream 100 bases:

>100_bases
GAATAACCCCCTCTCCTTGCCTTTTTAAGAGGTTCATGATAATAACCGAGGGCACGAATTAACCTTTTCAGGCGCCGTCT
GGGCGCCTTTTGGAGCGGTC

Downstream 100 bases:

>100_bases
AGGCAGTCTGAGTCTGACAGGTCTGACAGCTGAGACTGACCACAAAATCGCTCAACACCGGAGTTTTGCAATGGAAATTT
TCGACCTAACCATACACGAG

Product: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C

Products: NA

Alternate protein names: Asp/Glu-ADT subunit C

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MKITREQVEHVARLARLELSEAELDTFTGQMDSILSYVEKLNALDTEGIVPTSHAVPMENAFRADEATGSIGVEAALANA
PLRAQSFFRVPKVIE

Sequences:

>Translated_95_residues
MKITREQVEHVARLARLELSEAELDTFTGQMDSILSYVEKLNALDTEGIVPTSHAVPMENAFRADEATGSIGVEAALANA
PLRAQSFFRVPKVIE
>Mature_95_residues
MKITREQVEHVARLARLELSEAELDTFTGQMDSILSYVEKLNALDTEGIVPTSHAVPMENAFRADEATGSIGVEAALANA
PLRAQSFFRVPKVIE

Specific function: Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction take

COG id: COG0721

COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gatC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GATC_GEOBB (B5ED18)

Other databases:

- EMBL:   CP001124
- RefSeq:   YP_002140431.1
- ProteinModelPortal:   B5ED18
- SMR:   B5ED18
- GeneID:   6780507
- GenomeReviews:   CP001124_GR
- KEGG:   gbm:Gbem_3643
- HOGENOM:   HBG586403
- OMA:   PTSHAVP
- ProtClustDB:   CLSK829260
- GO:   GO:0006412
- HAMAP:   MF_00122
- InterPro:   IPR003837
- TIGRFAMs:   TIGR00135

Pfam domain/function: PF02686 Glu-tRNAGln

EC number: 6.3.5.-

Molecular weight: Translated: 10414; Mature: 10414

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITREQVEHVARLARLELSEAELDTFTGQMDSILSYVEKLNALDTEGIVPTSHAVPMEN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
AFRADEATGSIGVEAALANAPLRAQSFFRVPKVIE
HHCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MKITREQVEHVARLARLELSEAELDTFTGQMDSILSYVEKLNALDTEGIVPTSHAVPMEN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
AFRADEATGSIGVEAALANAPLRAQSFFRVPKVIE
HHCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA