| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197120001
Identifier: 197120001
GI number: 197120001
Start: 4163929
End: 4165149
Strand: Direct
Name: 197120001
Synonym: Gbem_3640
Alternate gene names: NA
Gene position: 4163929-4165149 (Clockwise)
Preceding gene: 197120000
Following gene: 197120002
Centisome position: 90.22
GC content: 60.36
Gene sequence:
>1221_bases TTGTCAACCGTCAATTGGTTTACGGCCTTTCGTTGTCAATTATCAATTGTCAATTGTCAATTGGTTTACGGGGTTAGTGT GGTCAAGATCATCGAGAAACATGTCCAGCTCGATTTCCCCCTGGGCCATCACCTGCACTGTCTCATCGCCCAGATCCCGA ACCGGCTGAGGCGCCGGGACCACCTCTTCACGCTGGAAAAGCCCGAAGAGCAGTGGCGCATGGTGCAAAGCGTGCTCGAC CTCGTGGCGGCGGGCGACGGGAACCTGAAGCGGCTGCACTTTCTCATGTTCCCGGAAACTTCGGTACCGCTGTCGCACTT TGACGAGATGCTCTCGACCATCGAGCACAAGTTCCGCCCCAACACGGTGACCATGTTCGGCTTGGAACAGATCACCCTGG AGCAGTACCGCAGCCTGCTGATCCGGTTCCACGCGGACAACGCCGACGCCCTGGAATGCGTCGAGCACGACGTGGATTCC GGCGACATCCTCGGCATGCCGGTCAACTGGTGCTGCGTCGCCATCAAGGAATCGACCGGCAGGGTCCGGGTCTTCCTCGA AGCGAAGACGCACCCTTTCCGCGGCGAGGAGTTCCTGGACAAGGACCACGACCTGTACCGCGGGCGCCATTTCTACCTCT TCAGGGGGGAACCGGCCTGCTTCAACTTCATGACGATAATCTGCCTCGATTACCTCTACCGCGACCTCTACTCGTCCAAC ATCAAGCAGATCATCGATCACTCGAACCGGCTCTTTTTCACCATGAGGCAGTCCCTGGACGCCCTCTTCGTGATCCAGTG CAACCCGAAACCGGAGCACCGCTCCTATCGCGAGGTGCTCTCGGGCTTCTACGGCGAGTACCTTGAGGACACGCCGGGGG TGCGCGAAACGGTGACGCTCTTCGGCAACTGTTCCGACGAAAGCGAGATCCAGGGGGTCCGCTGCGCTCCCTGCTACGGG ATTTCCTTCGTGGCTATCAGCGCGAAGCACAAGATGCCCCCTTACCAGGAGCGGGAGTTCTCCAGCGACGATTTCGACGG CGCGCCGGTCTGCCGCCTGCGCTTCAGCTCGGGAACGAGACTCTTCTATTTCAACCTCCCCCTGAACCACGAACTGGACC CGCGAACGTCCAGGGTTCCCCTCAAGGTGCACGCGGTGATGCGCTGGGCCGGCGAGGAGTGGGTCAAGGTGGGGGACGGC GAGGGGCAGTCCTCGCGGTAA
Upstream 100 bases:
>100_bases TGCTCAGCTGTTCATTGTCAATCGTCAATCGTACATTGGTAAGTGAAGTTCAGCCGTTCGTTGTCAATTGTTGTGTTGGT GTTCAGGTTTTAGTTGTCAA
Downstream 100 bases:
>100_bases CCGGCAGATTTTTTTTAAAAGCACGCATCCCCCCTCCCCTTGCGGGAGGGGGTTAGGGGGTGGGGGTAGGCGCAACGACA GCGCTTATTGCAGCTCCACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSTVNWFTAFRCQLSIVNCQLVYGVSVVKIIEKHVQLDFPLGHHLHCLIAQIPNRLRRRDHLFTLEKPEEQWRMVQSVLD LVAAGDGNLKRLHFLMFPETSVPLSHFDEMLSTIEHKFRPNTVTMFGLEQITLEQYRSLLIRFHADNADALECVEHDVDS GDILGMPVNWCCVAIKESTGRVRVFLEAKTHPFRGEEFLDKDHDLYRGRHFYLFRGEPACFNFMTIICLDYLYRDLYSSN IKQIIDHSNRLFFTMRQSLDALFVIQCNPKPEHRSYREVLSGFYGEYLEDTPGVRETVTLFGNCSDESEIQGVRCAPCYG ISFVAISAKHKMPPYQEREFSSDDFDGAPVCRLRFSSGTRLFYFNLPLNHELDPRTSRVPLKVHAVMRWAGEEWVKVGDG EGQSSR
Sequences:
>Translated_406_residues MSTVNWFTAFRCQLSIVNCQLVYGVSVVKIIEKHVQLDFPLGHHLHCLIAQIPNRLRRRDHLFTLEKPEEQWRMVQSVLD LVAAGDGNLKRLHFLMFPETSVPLSHFDEMLSTIEHKFRPNTVTMFGLEQITLEQYRSLLIRFHADNADALECVEHDVDS GDILGMPVNWCCVAIKESTGRVRVFLEAKTHPFRGEEFLDKDHDLYRGRHFYLFRGEPACFNFMTIICLDYLYRDLYSSN IKQIIDHSNRLFFTMRQSLDALFVIQCNPKPEHRSYREVLSGFYGEYLEDTPGVRETVTLFGNCSDESEIQGVRCAPCYG ISFVAISAKHKMPPYQEREFSSDDFDGAPVCRLRFSSGTRLFYFNLPLNHELDPRTSRVPLKVHAVMRWAGEEWVKVGDG EGQSSR >Mature_405_residues STVNWFTAFRCQLSIVNCQLVYGVSVVKIIEKHVQLDFPLGHHLHCLIAQIPNRLRRRDHLFTLEKPEEQWRMVQSVLDL VAAGDGNLKRLHFLMFPETSVPLSHFDEMLSTIEHKFRPNTVTMFGLEQITLEQYRSLLIRFHADNADALECVEHDVDSG DILGMPVNWCCVAIKESTGRVRVFLEAKTHPFRGEEFLDKDHDLYRGRHFYLFRGEPACFNFMTIICLDYLYRDLYSSNI KQIIDHSNRLFFTMRQSLDALFVIQCNPKPEHRSYREVLSGFYGEYLEDTPGVRETVTLFGNCSDESEIQGVRCAPCYGI SFVAISAKHKMPPYQEREFSSDDFDGAPVCRLRFSSGTRLFYFNLPLNHELDPRTSRVPLKVHAVMRWAGEEWVKVGDGE GQSSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47046; Mature: 46915
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVNWFTAFRCQLSIVNCQLVYGVSVVKIIEKHVQLDFPLGHHLHCLIAQIPNRLRRRD CCCCCEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHH HLFTLEKPEEQWRMVQSVLDLVAAGDGNLKRLHFLMFPETSVPLSHFDEMLSTIEHKFRP CEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC NTVTMFGLEQITLEQYRSLLIRFHADNADALECVEHDVDSGDILGMPVNWCCVAIKESTG CEEEEECHHHHHHHHHHHHEEEEECCCCHHHHHHHCCCCCCCEEECCHHEEEEEEEECCC RVRVFLEAKTHPFRGEEFLDKDHDLYRGRHFYLFRGEPACFNFMTIICLDYLYRDLYSSN EEEEEEEECCCCCCCHHHHCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH IKQIIDHSNRLFFTMRQSLDALFVIQCNPKPEHRSYREVLSGFYGEYLEDTPGVRETVTL HHHHHCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE FGNCSDESEIQGVRCAPCYGISFVAISAKHKMPPYQEREFSSDDFDGAPVCRLRFSSGTR EECCCCHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE LFYFNLPLNHELDPRTSRVPLKVHAVMRWAGEEWVKVGDGEGQSSR EEEEECCCCCCCCCCCCCCCEEEHHHHHHCCCCEEEECCCCCCCCC >Mature Secondary Structure STVNWFTAFRCQLSIVNCQLVYGVSVVKIIEKHVQLDFPLGHHLHCLIAQIPNRLRRRD CCCCEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHH HLFTLEKPEEQWRMVQSVLDLVAAGDGNLKRLHFLMFPETSVPLSHFDEMLSTIEHKFRP CEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC NTVTMFGLEQITLEQYRSLLIRFHADNADALECVEHDVDSGDILGMPVNWCCVAIKESTG CEEEEECHHHHHHHHHHHHEEEEECCCCHHHHHHHCCCCCCCEEECCHHEEEEEEEECCC RVRVFLEAKTHPFRGEEFLDKDHDLYRGRHFYLFRGEPACFNFMTIICLDYLYRDLYSSN EEEEEEEECCCCCCCHHHHCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH IKQIIDHSNRLFFTMRQSLDALFVIQCNPKPEHRSYREVLSGFYGEYLEDTPGVRETVTL HHHHHCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE FGNCSDESEIQGVRCAPCYGISFVAISAKHKMPPYQEREFSSDDFDGAPVCRLRFSSGTR EECCCCHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE LFYFNLPLNHELDPRTSRVPLKVHAVMRWAGEEWVKVGDGEGQSSR EEEEECCCCCCCCCCCCCCCEEEHHHHHHCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA