| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is atoS [C]
Identifier: 197119978
GI number: 197119978
Start: 4136418
End: 4138955
Strand: Direct
Name: atoS [C]
Synonym: Gbem_3617
Alternate gene names: 197119978
Gene position: 4136418-4138955 (Clockwise)
Preceding gene: 197119977
Following gene: 197119979
Centisome position: 89.63
GC content: 63.48
Gene sequence:
>2538_bases ATGAAACAGGGTGACGCCAACCAAAGAAGAGTCGAGACGGCGAGGATCGTCGGCATCTACGCCATCTTCGGCCTGGCCTG GATCTACGGGTCCGACCACGTCCTGGACTGGATGTTCGAAGACCGCGCCCTGCTGCTCCGGATCGCCGTCGCCAAAGGCT TCCTCTTCATACTCTGCACCGCTGCGCTGCTCTATTTCCTGATCAGCCGCTATCTCGACAGGCTCGGCGCCGCCGAGCGC GAAAGGCTCGAGATCCTGGACAACTACCGGACCATCTTCAACGCCACCAACGAAGCCATCTTCCTCCACGACATCGACAG CGGCCGCATCCTCGACGTGAACCAGCAGGTACTGGAGATGTACGGCTATACGCGGGAAGAGGCGCTAGCCGGCGACATCG GCCTGTTTTCCGCGGGGAGCGCCCCCTATTCCCAGTCCGAGGCGGTCGCCAAGGTGCGCAAGGCGGCCGATGAGGGGCCG CAGGTATTCCAATGGCTCGCCAAAAGGAAAAACGGCGAGCAGTTCTGGGCCGAGGTGTCGCTCAGGAGGACTACTGCCCG GGGGAAGCTCGCCATCATCGCCGTGGTCAGGGACGTGACCGAACGCAAGAGGCAGGAGGACGCCCTCAAGGAGAAAAACG CCCACCTGCGTTTCTTCTTCGAGTACGCGCCGGCCTCCCTGGCCATGTTCGACCGCAAGATGCGCTATATGCAGGTGAGC CGCCGCTGGCAGAGCATGTACGGGCTGGGCGACCGCAACCTGATCGGGCTGTCGCACTACGACGTCTTCCCCGAGATTAC CGAGCGCTGGAAGGAGTTGCACCGGCGTGGCCTTGCGGGGGAGGTCCTCGGGGAGGAGGCGGACCGGTTCGTGCGCGCCG ACGGCACCGTGCAGTGGGTGCGCTGGGAAATCCGCCCCTGGTACGAGGCGGTGGACCGAGTCGGGGGGATCGTCATCTTC ACCGAGGACATCACCCAGAGAAAATTGACCGAGGAGGCGCTCTCCGCCAACGAGCGCTTCCTGCGGATGCTCACCGACCA GCTCCCCGGCATGGTGGCCTACTGGGACAACGACCTGCGCTGCAGCTTCGCCAACAAGGCCTACCAGGAGTGGTTCGGCA AAAGCCCAGAGCAGATGATCGGGATCACCCTGCCGGAACTGCTGGGGGAAAAACTCTTCGCGGAAAACGAGCAGTACGTC CGGAAAGCCCTGGCGGGCGAGCCGCAGCACTTCGAAAGGACCCTGGTGAAGCCGGGGGGAGAGAAGGGCTACACCTGGGC GCATTACATCCCGGACAAGATAGGGGGCGTTACCAGGGGGTTCTATGTCCTCGTCTCCGACGTGACGGAACTGAAGCTCG CCGAGGCGGAGAAGGTCCGGCTGGAATCCCAGCTGCAGCAGGCGCAAAAGCTGGAATCGGTGGGACGTCTGGCAGGCGGC GTGGCGCACGATTTCAACAACCTTCTCACCGTGATACTGGGGCTGGCGCAACTGGGGATGGGGGAACTCGACCCCGGCGA CCCGGTCCGCGGCCGGCTCGAAGGGATCAGGCAGGCGGCCGAGAAGTCCGCCGCGCTGACGCAACAGCTGCTTGGTTTCG CCAGGAAGCAGACCATCGCCCCCGTAATGCTGGACCTGAACCAGACGGTGGAGCAGATGCTGAGCATGCTGAAACGGCTG GTGGGCGAAAATATCGAGGTGGTGTGGCGCCCGGCGCGGGAGCTTTGGCGGGTCAAGATGGACCCGACCCAGTTGGATCA GATCCTCGCCAACCTCTGCGTCAACGCCCGCGACGCCATTGACGATGTCGGCAGGATCATCATAGAGACTGGAAACGCAA GGCTCGACCAGGAATACTGCGCCGCCCGCTTCGGGTTCGTTCCCGGCGAGTACGTGCAGTTGACGGTGAGCGACGACGGC TGCGGCATGGATAAGGAGATGATGGCGCACATCTTCGAGCCTTTCTTCACCACGAAAAAGCTGGGGAAGGGAACGGGGCT AGGTCTCGCCACCCTGTACGGCATCGTCAAGCAGAACAACGGCTTCATAAACACCTACAGCGAGCCCTGCGCGGGAACCA CCTTCAAGATCTACCTTCCCCGCCACGATGCGGCAAAGGCCGAGACGTTGCCGGAGCCTGCGGAGCAGCCGGTTTCCCGC GGCCACGAGACTATCCTGCTGGTGGAGGACGAGCCTAGCATCCGGGAGGTGACGATTTCCCTGTTGCAGCTGCAGGGGTA CCGGGTGCTGGCAGCGGGACTCCCCCGCGAGGCCCTGGAACTCGCCCGCGCCCACGCAGACGAGATCGACCTGGTGATGA CCGACGTGGTGATGCCCGAGATGAACGGCAGGGAACTGGCGCGCAGCCTCCTCGCCATCTCTCCCCGACTGAAGGTCCTG TTCATGTCGGGATACACGGCCAACGTCATCGCCCACCACGGCGTGCTCGAGGAAGGGGTCAACTTCATCTCGAAGCCGTT TTCGCTGCCGGACCTGGCGGAAAAGGTGCGCGAGGTGCTGGACGCGAAGACGCCGTGA
Upstream 100 bases:
>100_bases CAGCCGGCGCCATACATCTTTTTCACGAGACTTTTCCCCGCAATTTGGCTAGCATGGCCCACTTGAAGCTAAGCAATAAG ACCGCCGCCACAGGAGCAGC
Downstream 100 bases:
>100_bases CGCGCTGAGAAGCGACCCAGCTTCCCGCATGACAGAATTGTCATCTCGGTGCAATGTTCCAGCAACGCTTACTCCTGTAT CTTATCGTCGCCCACGGGCA
Product: PAS domain-containing sensor histidine kinase response regulator
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MKQGDANQRRVETARIVGIYAIFGLAWIYGSDHVLDWMFEDRALLLRIAVAKGFLFILCTAALLYFLISRYLDRLGAAER ERLEILDNYRTIFNATNEAIFLHDIDSGRILDVNQQVLEMYGYTREEALAGDIGLFSAGSAPYSQSEAVAKVRKAADEGP QVFQWLAKRKNGEQFWAEVSLRRTTARGKLAIIAVVRDVTERKRQEDALKEKNAHLRFFFEYAPASLAMFDRKMRYMQVS RRWQSMYGLGDRNLIGLSHYDVFPEITERWKELHRRGLAGEVLGEEADRFVRADGTVQWVRWEIRPWYEAVDRVGGIVIF TEDITQRKLTEEALSANERFLRMLTDQLPGMVAYWDNDLRCSFANKAYQEWFGKSPEQMIGITLPELLGEKLFAENEQYV RKALAGEPQHFERTLVKPGGEKGYTWAHYIPDKIGGVTRGFYVLVSDVTELKLAEAEKVRLESQLQQAQKLESVGRLAGG VAHDFNNLLTVILGLAQLGMGELDPGDPVRGRLEGIRQAAEKSAALTQQLLGFARKQTIAPVMLDLNQTVEQMLSMLKRL VGENIEVVWRPARELWRVKMDPTQLDQILANLCVNARDAIDDVGRIIIETGNARLDQEYCAARFGFVPGEYVQLTVSDDG CGMDKEMMAHIFEPFFTTKKLGKGTGLGLATLYGIVKQNNGFINTYSEPCAGTTFKIYLPRHDAAKAETLPEPAEQPVSR GHETILLVEDEPSIREVTISLLQLQGYRVLAAGLPREALELARAHADEIDLVMTDVVMPEMNGRELARSLLAISPRLKVL FMSGYTANVIAHHGVLEEGVNFISKPFSLPDLAEKVREVLDAKTP
Sequences:
>Translated_845_residues MKQGDANQRRVETARIVGIYAIFGLAWIYGSDHVLDWMFEDRALLLRIAVAKGFLFILCTAALLYFLISRYLDRLGAAER ERLEILDNYRTIFNATNEAIFLHDIDSGRILDVNQQVLEMYGYTREEALAGDIGLFSAGSAPYSQSEAVAKVRKAADEGP QVFQWLAKRKNGEQFWAEVSLRRTTARGKLAIIAVVRDVTERKRQEDALKEKNAHLRFFFEYAPASLAMFDRKMRYMQVS RRWQSMYGLGDRNLIGLSHYDVFPEITERWKELHRRGLAGEVLGEEADRFVRADGTVQWVRWEIRPWYEAVDRVGGIVIF TEDITQRKLTEEALSANERFLRMLTDQLPGMVAYWDNDLRCSFANKAYQEWFGKSPEQMIGITLPELLGEKLFAENEQYV RKALAGEPQHFERTLVKPGGEKGYTWAHYIPDKIGGVTRGFYVLVSDVTELKLAEAEKVRLESQLQQAQKLESVGRLAGG VAHDFNNLLTVILGLAQLGMGELDPGDPVRGRLEGIRQAAEKSAALTQQLLGFARKQTIAPVMLDLNQTVEQMLSMLKRL VGENIEVVWRPARELWRVKMDPTQLDQILANLCVNARDAIDDVGRIIIETGNARLDQEYCAARFGFVPGEYVQLTVSDDG CGMDKEMMAHIFEPFFTTKKLGKGTGLGLATLYGIVKQNNGFINTYSEPCAGTTFKIYLPRHDAAKAETLPEPAEQPVSR GHETILLVEDEPSIREVTISLLQLQGYRVLAAGLPREALELARAHADEIDLVMTDVVMPEMNGRELARSLLAISPRLKVL FMSGYTANVIAHHGVLEEGVNFISKPFSLPDLAEKVREVLDAKTP >Mature_845_residues MKQGDANQRRVETARIVGIYAIFGLAWIYGSDHVLDWMFEDRALLLRIAVAKGFLFILCTAALLYFLISRYLDRLGAAER ERLEILDNYRTIFNATNEAIFLHDIDSGRILDVNQQVLEMYGYTREEALAGDIGLFSAGSAPYSQSEAVAKVRKAADEGP QVFQWLAKRKNGEQFWAEVSLRRTTARGKLAIIAVVRDVTERKRQEDALKEKNAHLRFFFEYAPASLAMFDRKMRYMQVS RRWQSMYGLGDRNLIGLSHYDVFPEITERWKELHRRGLAGEVLGEEADRFVRADGTVQWVRWEIRPWYEAVDRVGGIVIF TEDITQRKLTEEALSANERFLRMLTDQLPGMVAYWDNDLRCSFANKAYQEWFGKSPEQMIGITLPELLGEKLFAENEQYV RKALAGEPQHFERTLVKPGGEKGYTWAHYIPDKIGGVTRGFYVLVSDVTELKLAEAEKVRLESQLQQAQKLESVGRLAGG VAHDFNNLLTVILGLAQLGMGELDPGDPVRGRLEGIRQAAEKSAALTQQLLGFARKQTIAPVMLDLNQTVEQMLSMLKRL VGENIEVVWRPARELWRVKMDPTQLDQILANLCVNARDAIDDVGRIIIETGNARLDQEYCAARFGFVPGEYVQLTVSDDG CGMDKEMMAHIFEPFFTTKKLGKGTGLGLATLYGIVKQNNGFINTYSEPCAGTTFKIYLPRHDAAKAETLPEPAEQPVSR GHETILLVEDEPSIREVTISLLQLQGYRVLAAGLPREALELARAHADEIDLVMTDVVMPEMNGRELARSLLAISPRLKVL FMSGYTANVIAHHGVLEEGVNFISKPFSLPDLAEKVREVLDAKTP
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=263, Percent_Identity=31.1787072243346, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI1790436, Length=241, Percent_Identity=29.4605809128631, Blast_Score=107, Evalue=4e-24, Organism=Escherichia coli, GI48994928, Length=553, Percent_Identity=25.3164556962025, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1788713, Length=262, Percent_Identity=30.5343511450382, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI87081816, Length=340, Percent_Identity=26.4705882352941, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1790300, Length=355, Percent_Identity=26.7605633802817, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI1786912, Length=281, Percent_Identity=27.7580071174377, Blast_Score=71, Evalue=4e-13, Organism=Escherichia coli, GI1789808, Length=228, Percent_Identity=29.3859649122807, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1790860, Length=120, Percent_Identity=35.8333333333333, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 95347; Mature: 95347
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQGDANQRRVETARIVGIYAIFGLAWIYGSDHVLDWMFEDRALLLRIAVAKGFLFILCT CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH AALLYFLISRYLDRLGAAERERLEILDNYRTIFNATNEAIFLHDIDSGRILDVNQQVLEM HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCHHHHHH YGYTREEALAGDIGLFSAGSAPYSQSEAVAKVRKAADEGPQVFQWLAKRKNGEQFWAEVS HCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH LRRTTARGKLAIIAVVRDVTERKRQEDALKEKNAHLRFFFEYAPASLAMFDRKMRYMQVS HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHH RRWQSMYGLGDRNLIGLSHYDVFPEITERWKELHRRGLAGEVLGEEADRFVRADGTVQWV HHHHHHHCCCCCCEEECHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCEEEE RWEIRPWYEAVDRVGGIVIFTEDITQRKLTEEALSANERFLRMLTDQLPGMVAYWDNDLR EEECCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE CSFANKAYQEWFGKSPEQMIGITLPELLGEKLFAENEQYVRKALAGEPQHFERTLVKPGG EHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCC EKGYTWAHYIPDKIGGVTRGFYVLVSDVTELKLAEAEKVRLESQLQQAQKLESVGRLAGG CCCCEEHEECCHHHCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAHDFNNLLTVILGLAQLGMGELDPGDPVRGRLEGIRQAAEKSAALTQQLLGFARKQTIA HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVMLDLNQTVEQMLSMLKRLVGENIEVVWRPARELWRVKMDPTQLDQILANLCVNARDAI HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHEECCCHHHHHHHHHHHHCCCHHHH DDVGRIIIETGNARLDQEYCAARFGFVPGEYVQLTVSDDGCGMDKEMMAHIFEPFFTTKK HHHHHEEEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH LGKGTGLGLATLYGIVKQNNGFINTYSEPCAGTTFKIYLPRHDAAKAETLPEPAEQPVSR CCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCHHHCCCCCHHHHHHC GHETILLVEDEPSIREVTISLLQLQGYRVLAAGLPREALELARAHADEIDLVMTDVVMPE CCCEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCC MNGRELARSLLAISPRLKVLFMSGYTANVIAHHGVLEEGVNFISKPFSLPDLAEKVREVL CCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH DAKTP CCCCC >Mature Secondary Structure MKQGDANQRRVETARIVGIYAIFGLAWIYGSDHVLDWMFEDRALLLRIAVAKGFLFILCT CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH AALLYFLISRYLDRLGAAERERLEILDNYRTIFNATNEAIFLHDIDSGRILDVNQQVLEM HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCHHHHHH YGYTREEALAGDIGLFSAGSAPYSQSEAVAKVRKAADEGPQVFQWLAKRKNGEQFWAEVS HCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH LRRTTARGKLAIIAVVRDVTERKRQEDALKEKNAHLRFFFEYAPASLAMFDRKMRYMQVS HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHH RRWQSMYGLGDRNLIGLSHYDVFPEITERWKELHRRGLAGEVLGEEADRFVRADGTVQWV HHHHHHHCCCCCCEEECHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCEEEE RWEIRPWYEAVDRVGGIVIFTEDITQRKLTEEALSANERFLRMLTDQLPGMVAYWDNDLR EEECCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE CSFANKAYQEWFGKSPEQMIGITLPELLGEKLFAENEQYVRKALAGEPQHFERTLVKPGG EHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCC EKGYTWAHYIPDKIGGVTRGFYVLVSDVTELKLAEAEKVRLESQLQQAQKLESVGRLAGG CCCCEEHEECCHHHCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAHDFNNLLTVILGLAQLGMGELDPGDPVRGRLEGIRQAAEKSAALTQQLLGFARKQTIA HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVMLDLNQTVEQMLSMLKRLVGENIEVVWRPARELWRVKMDPTQLDQILANLCVNARDAI HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHEECCCHHHHHHHHHHHHCCCHHHH DDVGRIIIETGNARLDQEYCAARFGFVPGEYVQLTVSDDGCGMDKEMMAHIFEPFFTTKK HHHHHEEEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH LGKGTGLGLATLYGIVKQNNGFINTYSEPCAGTTFKIYLPRHDAAKAETLPEPAEQPVSR CCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCHHHCCCCCHHHHHHC GHETILLVEDEPSIREVTISLLQLQGYRVLAAGLPREALELARAHADEIDLVMTDVVMPE CCCEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCC MNGRELARSLLAISPRLKVLFMSGYTANVIAHHGVLEEGVNFISKPFSLPDLAEKVREVL CCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH DAKTP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA