| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119928
Identifier: 197119928
GI number: 197119928
Start: 4078538
End: 4079158
Strand: Direct
Name: 197119928
Synonym: Gbem_3567
Alternate gene names: NA
Gene position: 4078538-4079158 (Clockwise)
Preceding gene: 197119927
Following gene: 197119932
Centisome position: 88.37
GC content: 44.93
Gene sequence:
>621_bases ATGATCCCTGCTTCTGAAATACCAGATTATCTGCCAAAGTATCTCACGGATCACTCATACAAAGAGCTGCGAGAGGCTGT AAAACGCTTCCCGGAGATAGCTTACAACAGGTTCTACAGCAATCACGGCATTGCCCCCGGTACTGTATATCAGGGCGATT GCATTGCCGGCCTCCCATATACCCGAAATGGTGTCCTAAATACGACGTCCAAATGTTTTGTTTTATCTAACACATGCGAC ATGGAAATATCCGAAAATAAAAGGTATTTCAACTCTAACATTCTTTTCACCCCAATCATTGATTTCAAGTCCTACGAAGA TTCCCTGCTCGCAAAGCACAAGGTATCCGCGGTCGAAAATCATTTAGCTGAGATTAAAAAACAATGTGCATCCCAAATAA TGTATCTCCCCGACAATAGCCACATCCCTAATGGAGGTATTGTTTTTTGGGATCAGATATACCATGTCCTGAGTTCTTCT TTGGAAAGGTCAAGTCTTTCGGACCGCCGTCTTTTCTCGCTCAGCAACTACGGCCACTATTGCATGTGCATTAAACTGTC TCATCACCTTTGCAGAGTGACAGCCGAAACTGATCGTCCCGCGACCGCCCCGCTCGTATAA
Upstream 100 bases:
>100_bases GCATATTCGCTAATTTTTCTCTCGGCATTTCCAAGCAGAGCGCGGACGTGCCAGGTTATTTTTTCGACATCCTGCATGAC GAGTTCGACTCTCTGCTTGC
Downstream 100 bases:
>100_bases GGCCATTCGCGTCTGCCATATAAGTTTCCCAAGGCAGGCCAGAGGCCCCTCTTCTCTTCCCGACGCTCCCCTGGCATAGG CTGCACGCTCTTCCTTATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MIPASEIPDYLPKYLTDHSYKELREAVKRFPEIAYNRFYSNHGIAPGTVYQGDCIAGLPYTRNGVLNTTSKCFVLSNTCD MEISENKRYFNSNILFTPIIDFKSYEDSLLAKHKVSAVENHLAEIKKQCASQIMYLPDNSHIPNGGIVFWDQIYHVLSSS LERSSLSDRRLFSLSNYGHYCMCIKLSHHLCRVTAETDRPATAPLV
Sequences:
>Translated_206_residues MIPASEIPDYLPKYLTDHSYKELREAVKRFPEIAYNRFYSNHGIAPGTVYQGDCIAGLPYTRNGVLNTTSKCFVLSNTCD MEISENKRYFNSNILFTPIIDFKSYEDSLLAKHKVSAVENHLAEIKKQCASQIMYLPDNSHIPNGGIVFWDQIYHVLSSS LERSSLSDRRLFSLSNYGHYCMCIKLSHHLCRVTAETDRPATAPLV >Mature_206_residues MIPASEIPDYLPKYLTDHSYKELREAVKRFPEIAYNRFYSNHGIAPGTVYQGDCIAGLPYTRNGVLNTTSKCFVLSNTCD MEISENKRYFNSNILFTPIIDFKSYEDSLLAKHKVSAVENHLAEIKKQCASQIMYLPDNSHIPNGGIVFWDQIYHVLSSS LERSSLSDRRLFSLSNYGHYCMCIKLSHHLCRVTAETDRPATAPLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23465; Mature: 23465
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPASEIPDYLPKYLTDHSYKELREAVKRFPEIAYNRFYSNHGIAPGTVYQGDCIAGLPY CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEECCCC TRNGVLNTTSKCFVLSNTCDMEISENKRYFNSNILFTPIIDFKSYEDSLLAKHKVSAVEN CCCCCCCCCCEEEEEECCCCCEECCCCEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHH HLAEIKKQCASQIMYLPDNSHIPNGGIVFWDQIYHVLSSSLERSSLSDRRLFSLSNYGHY HHHHHHHHHHHCEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCE CMCIKLSHHLCRVTAETDRPATAPLV EEEEEECHHHHEEECCCCCCCCCCCC >Mature Secondary Structure MIPASEIPDYLPKYLTDHSYKELREAVKRFPEIAYNRFYSNHGIAPGTVYQGDCIAGLPY CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEECCCC TRNGVLNTTSKCFVLSNTCDMEISENKRYFNSNILFTPIIDFKSYEDSLLAKHKVSAVEN CCCCCCCCCCEEEEEECCCCCEECCCCEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHH HLAEIKKQCASQIMYLPDNSHIPNGGIVFWDQIYHVLSSSLERSSLSDRRLFSLSNYGHY HHHHHHHHHHHCEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCE CMCIKLSHHLCRVTAETDRPATAPLV EEEEEECHHHHEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA