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The map label for this gene is ybjT [C]

Identifier: 197119922

GI number: 197119922

Start: 4074473

End: 4075360

Strand: Direct

Name: ybjT [C]

Synonym: Gbem_3561

Alternate gene names: 197119922

Gene position: 4074473-4075360 (Clockwise)

Preceding gene: 197119920

Following gene: 197119923

Centisome position: 88.28

GC content: 59.91

Gene sequence:

>888_bases
ATGAGAGTATTTCTAGCCGGCGGAACCGGTTTTGTAGGCGGTCATGTAAGGCAAGCCCTGCTTGAGCGCGGCCATAGCAT
TCGGCTTTTGGTACACCGAAAGGGAGCAAGCGAAAAACTCGCCGGCATCGAAGAGATCGAGGGTGACGCAACACTTCCCG
AGAGCTTCACCGATGCCGTCAAGGGATGCGACGCCACCATCAACCTGATCGGCATTATTCGCGAATTTCCCGGGCGCGGC
ATCACCTTCCAGCGGCTTCACGTCGAAGCCACCCGCAACATCATCGCCGCAGCGAAGAATAACGGAGTGACGCGCCACCT
CCAGATGTCCGCTCTCGGAACCCGCGCCAACAGCGAAGCGCGCTACTTCAAAAGCAAGTTTGAGGCGGAAGAAGCGGTAC
GCGCCTCGGGTCTCGACTACACCATCTTCCGCCCCTCCATCATCTTCGGCCCGAAGGATGATTTCATCAACCAATTGGCC
GGGCTCCTCAGGATGTTGCCGGCGATGCCGGTCATAGGCGACGGCGAATACCAGTTGCAGCCCATAAGCGCGGACGACGT
GGCGCGCTGCTTCGCCGAGGCCCTGGAGAAACCGGAGGCCATTGGCGAGACCTTTGAGCTATGCGGTCCCGACCGGTTAA
GTTACAACGAACTGCTCGACACCATCGCACGGGTCATGGGAAAGGGGCGGGTGCTGAAGATCAAAAACCCGCTGCCGCTG
ATGCGCCTGGTGGTGCCGCTTTTCGAAAGTTTCCCCTTCTTCCCCGTCACCTCCGACCAGATCACCATGCTGGTGCAGGG
AAGCATCTGCGACGGCGGCTGGCGCAGGACCTTCACCTTCCAGCCCACCCGACTAGAACCCGGCATCCGCAGTTACCTCA
AGCCCTAG

Upstream 100 bases:

>100_bases
ATCTGAGCACAAGTATTTGTATACGACAAGCCGTTCAATGGAGATTTTGCCAACTCTTGATACACTTTGCGCTGCGGAAA
AAGCTTCAAAGGGAGGGGCT

Downstream 100 bases:

>100_bases
TCAAAAACCTCAAATCTTTCACCACAGAGGACACAGAGGATCACAGAGGAAAAACAGGACCGAGGAAATCATAAACTTTT
GGGTTAAATCAAAGCCTTTA

Product: NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase

Products: NAD+; ubiquinol

Alternate protein names: NADH Dehydrogenase; NADH-Ubiquinone Oxidoreductase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Nucleoside-Diphosphate-Sugar Epimerase; NmrA Family Protein; Oxidoreductase; NAD-Dependent Epimerase/Dehydratase Family Protein; NAD Dependent Epimerase/Dehydratase Family Protein; NADH-Ubiquinone Oxidoreductase Subunit; Oxidoreductase Protein; NADH-Ubiquinone Oxidoreductase Family Protein; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; Dtdp-Glucose-46-Dehydratase; NADH-Ubiquinone Oxireductase; 3-Beta-Hydroxy-Delta(5)-Steroid Dehydrogenase; NADH Ubiquinone Oxidoreductase; NADH Dehydrogenase/Oxidoreductase-Like Protein; Homolog NADH Dehydrogenase; Male Sterility-Like Protein; NAD Dependent Epimerase/Dehydratase/Dehydrogenase; Methyltransferase FkbM; NADH Dehydrogenase-Like Protein; Nucleoside-Diphosphate-Sugar Epimerases; NAD Dependent Epimerase; NADH Dehydrogenase 1 Alpha Subcomplex; Nucleoside-Diphosphate Sugar Epimerase; NAD Dependent Epimerase/Dehydratase Family; NADH-Ubiquinone Oxidoreductase -Like Protein; Dehydrogenase; NmrA-Like Protein; NADH-Ubiquinone Oxidoreductase Putativ; NADH-Quinone Oxidoreductase; NADH Dehydrogenase/NADH Dehydrogenase Protein; NAD Dependent Epimerase/Dehydratase; Ubiquinone Dependent NADH Dehydrogenase; NADH Dehydrogenase Subunit

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRVFLAGGTGFVGGHVRQALLERGHSIRLLVHRKGASEKLAGIEEIEGDATLPESFTDAVKGCDATINLIGIIREFPGRG
ITFQRLHVEATRNIIAAAKNNGVTRHLQMSALGTRANSEARYFKSKFEAEEAVRASGLDYTIFRPSIIFGPKDDFINQLA
GLLRMLPAMPVIGDGEYQLQPISADDVARCFAEALEKPEAIGETFELCGPDRLSYNELLDTIARVMGKGRVLKIKNPLPL
MRLVVPLFESFPFFPVTSDQITMLVQGSICDGGWRRTFTFQPTRLEPGIRSYLKP

Sequences:

>Translated_295_residues
MRVFLAGGTGFVGGHVRQALLERGHSIRLLVHRKGASEKLAGIEEIEGDATLPESFTDAVKGCDATINLIGIIREFPGRG
ITFQRLHVEATRNIIAAAKNNGVTRHLQMSALGTRANSEARYFKSKFEAEEAVRASGLDYTIFRPSIIFGPKDDFINQLA
GLLRMLPAMPVIGDGEYQLQPISADDVARCFAEALEKPEAIGETFELCGPDRLSYNELLDTIARVMGKGRVLKIKNPLPL
MRLVVPLFESFPFFPVTSDQITMLVQGSICDGGWRRTFTFQPTRLEPGIRSYLKP
>Mature_295_residues
MRVFLAGGTGFVGGHVRQALLERGHSIRLLVHRKGASEKLAGIEEIEGDATLPESFTDAVKGCDATINLIGIIREFPGRG
ITFQRLHVEATRNIIAAAKNNGVTRHLQMSALGTRANSEARYFKSKFEAEEAVRASGLDYTIFRPSIIFGPKDDFINQLA
GLLRMLPAMPVIGDGEYQLQPISADDVARCFAEALEKPEAIGETFELCGPDRLSYNELLDTIARVMGKGRVLKIKNPLPL
MRLVVPLFESFPFFPVTSDQITMLVQGSICDGGWRRTFTFQPTRLEPGIRSYLKP

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=265, Percent_Identity=27.9245283018868, Blast_Score=92, Evalue=4e-19,
Organism=Escherichia coli, GI87081793, Length=268, Percent_Identity=21.6417910447761, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17556106, Length=182, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24667554, Length=241, Percent_Identity=31.5352697095436, Blast_Score=107, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 32579; Mature: 32579

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVFLAGGTGFVGGHVRQALLERGHSIRLLVHRKGASEKLAGIEEIEGDATLPESFTDAV
CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEECCCCHHHCCHHHCCCCCCCCHHHHHHH
KGCDATINLIGIIREFPGRGITFQRLHVEATRNIIAAAKNNGVTRHLQMSALGTRANSEA
HCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCHH
RYFKSKFEAEEAVRASGLDYTIFRPSIIFGPKDDFINQLAGLLRMLPAMPVIGDGEYQLQ
HHHHHHHHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHCCCEECCCCEEEE
PISADDVARCFAEALEKPEAIGETFELCGPDRLSYNELLDTIARVMGKGRVLKIKNPLPL
ECCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHH
MRLVVPLFESFPFFPVTSDQITMLVQGSICDGGWRRTFTFQPTRLEPGIRSYLKP
HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHCCC
>Mature Secondary Structure
MRVFLAGGTGFVGGHVRQALLERGHSIRLLVHRKGASEKLAGIEEIEGDATLPESFTDAV
CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEECCCCHHHCCHHHCCCCCCCCHHHHHHH
KGCDATINLIGIIREFPGRGITFQRLHVEATRNIIAAAKNNGVTRHLQMSALGTRANSEA
HCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCHH
RYFKSKFEAEEAVRASGLDYTIFRPSIIFGPKDDFINQLAGLLRMLPAMPVIGDGEYQLQ
HHHHHHHHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHCCCEECCCCEEEE
PISADDVARCFAEALEKPEAIGETFELCGPDRLSYNELLDTIARVMGKGRVLKIKNPLPL
ECCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHH
MRLVVPLFESFPFFPVTSDQITMLVQGSICDGGWRRTFTFQPTRLEPGIRSYLKP
HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA