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The map label for this gene is pal [H]

Identifier: 197119876

GI number: 197119876

Start: 4025842

End: 4026441

Strand: Direct

Name: pal [H]

Synonym: Gbem_3514

Alternate gene names: 197119876

Gene position: 4025842-4026441 (Clockwise)

Preceding gene: 197119875

Following gene: 197119877

Centisome position: 87.23

GC content: 62.33

Gene sequence:

>600_bases
ATGCGCAAGATGATTCTCGGATCCCTGGTTGTTCTGACTTTCGGAGCACTTCTTTCGGCCGGCTGCGCCAAAAAGGACGT
CGTGAAAACAGAGGAGCCGATTTCGGCTGCCCAGTCCGCCCCCGCTCCGGCACCCGTGCAGACGCAGCAACAGGCACGGC
CGGAGGCCCCCGCGGCGCAGCAGCCCATCACCGAGACCACTCCCAGCCGCGAGCAGCCCGTGGCCCAGGAAACCCCCAAA
GATGCCGGCAAGGCGCAAGAAGTCCAGGCAGAGCTGCAGAAGGTCTACTTCAACTTCGACTCCTCCGATCTTTCGGAAGA
AGCACGCGCTTCCCTCTCCAAAAACGCCGAGTACCTGAGCCGCCAAGCCGGGACCAAGGTGCGCATCGAGGGTAACTGCG
ACGAGCGCGGCTCCGACGACTACAACATGGCGCTGGGCGAAAGAAGGGCGAAGTCCGCCAAGGACTACCTGGTCAACCTG
GGCATCGCCTCCGACCGTCTCTCCACCATAAGCTACGGCGAAGAGAAGCCCGCCGATCCGGGTCACGACGAGGCGGCCTG
GGCCAAGAACAGAAGGGATGAATTCGTCATCGTCAAGTAA

Upstream 100 bases:

>100_bases
TGATTAACTCGGAAAAGGTGAGTATACTTTCCTTCGCTTTTTAACCACGGCACGCTCATGAGGAGCGGCACGTATTCTAT
CTAGAAAAAGGAGTGGGATA

Downstream 100 bases:

>100_bases
CTCAAGCAGTTCCTGCCGAAAAGGAGCCTCAGGGCTCCTTTTTTTATAGAGCAGCAGGATCACAGGAGGTTTGTCATGCA
GGCAATGAGAGTGGCACTGG

Product: OmpA family outer membrane lipoprotein

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRKMILGSLVVLTFGALLSAGCAKKDVVKTEEPISAAQSAPAPAPVQTQQQARPEAPAAQQPITETTPSREQPVAQETPK
DAGKAQEVQAELQKVYFNFDSSDLSEEARASLSKNAEYLSRQAGTKVRIEGNCDERGSDDYNMALGERRAKSAKDYLVNL
GIASDRLSTISYGEEKPADPGHDEAAWAKNRRDEFVIVK

Sequences:

>Translated_199_residues
MRKMILGSLVVLTFGALLSAGCAKKDVVKTEEPISAAQSAPAPAPVQTQQQARPEAPAAQQPITETTPSREQPVAQETPK
DAGKAQEVQAELQKVYFNFDSSDLSEEARASLSKNAEYLSRQAGTKVRIEGNCDERGSDDYNMALGERRAKSAKDYLVNL
GIASDRLSTISYGEEKPADPGHDEAAWAKNRRDEFVIVK
>Mature_199_residues
MRKMILGSLVVLTFGALLSAGCAKKDVVKTEEPISAAQSAPAPAPVQTQQQARPEAPAAQQPITETTPSREQPVAQETPK
DAGKAQEVQAELQKVYFNFDSSDLSEEARASLSKNAEYLSRQAGTKVRIEGNCDERGSDDYNMALGERRAKSAKDYLVNL
GIASDRLSTISYGEEKPADPGHDEAAWAKNRRDEFVIVK

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=47.0588235294118, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21609; Mature: 21609

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKMILGSLVVLTFGALLSAGCAKKDVVKTEEPISAAQSAPAPAPVQTQQQARPEAPAAQ
CCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCCCCCCCHHHCCCCCCCCC
QPITETTPSREQPVAQETPKDAGKAQEVQAELQKVYFNFDSSDLSEEARASLSKNAEYLS
CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RQAGTKVRIEGNCDERGSDDYNMALGERRAKSAKDYLVNLGIASDRLSTISYGEEKPADP
HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
GHDEAAWAKNRRDEFVIVK
CCCHHHHHHCCCCCEEEEC
>Mature Secondary Structure
MRKMILGSLVVLTFGALLSAGCAKKDVVKTEEPISAAQSAPAPAPVQTQQQARPEAPAAQ
CCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCCCCCCCHHHCCCCCCCCC
QPITETTPSREQPVAQETPKDAGKAQEVQAELQKVYFNFDSSDLSEEARASLSKNAEYLS
CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RQAGTKVRIEGNCDERGSDDYNMALGERRAKSAKDYLVNLGIASDRLSTISYGEEKPADP
HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
GHDEAAWAKNRRDEFVIVK
CCCHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]