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The map label for this gene is tolR [H]

Identifier: 197119873

GI number: 197119873

Start: 4023305

End: 4023724

Strand: Direct

Name: tolR [H]

Synonym: Gbem_3511

Alternate gene names: 197119873

Gene position: 4023305-4023724 (Clockwise)

Preceding gene: 197119872

Following gene: 197119874

Centisome position: 87.18

GC content: 61.67

Gene sequence:

>420_bases
ATGGAGTTCGGCAACAGGGATAACGGCGACCGCGGCACAATGTCGCAGATCAACGTGACGCCGCTGGTCGACGTCATGCT
GGTGCTTTTGATCATCTTCATGGTCACGGCGCCGATGATGCAGCAGGGGGTCCAGGTGAACCTCCCCAAGGCGGACACCA
AGGCGCTGGCCCCCAAGGAGGACACCCTGGTGGTCTCCCTGGAGCAGTCCGGCAAAACCTTCATCAATTCCTCCGAAATC
TCCCAGGACCAGCTCAAAGAGAAGCTCACCTCGATGCTGGCCGGCAGGGAGAAACGCGAAGTCTTCCTAAAGGCTGACCA
GGCGGTCCCCTACGGCGAGGTCGTGAAGGTGATGGCCCAGATCAAGGGGGCGGGAGTCGAGCGGCTCGGCATGGTAACGG
AGTCCCCGCAGCGGCGATGA

Upstream 100 bases:

>100_bases
CCACTTCCAGCACAAGATCAAGGTGCTCATCTCGGAGATGGACAGCTTCTCCACCGAGTTCCTCAACATCGTGCAGCGCA
ACTTCGCGGGGAGATAAGCC

Downstream 100 bases:

>100_bases
GAAAACAGCTGACACGCCGATACCCGGGGCCGCAGGGGATGTTCGCGCTCTCCTTCGTCTGCCACCTGGTCGTGTTTCTG
ATCATAGCCAAGTGGCAACT

Product: ExbD/TolR-like biopolymer transport membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MEFGNRDNGDRGTMSQINVTPLVDVMLVLLIIFMVTAPMMQQGVQVNLPKADTKALAPKEDTLVVSLEQSGKTFINSSEI
SQDQLKEKLTSMLAGREKREVFLKADQAVPYGEVVKVMAQIKGAGVERLGMVTESPQRR

Sequences:

>Translated_139_residues
MEFGNRDNGDRGTMSQINVTPLVDVMLVLLIIFMVTAPMMQQGVQVNLPKADTKALAPKEDTLVVSLEQSGKTFINSSEI
SQDQLKEKLTSMLAGREKREVFLKADQAVPYGEVVKVMAQIKGAGVERLGMVTESPQRR
>Mature_139_residues
MEFGNRDNGDRGTMSQINVTPLVDVMLVLLIIFMVTAPMMQQGVQVNLPKADTKALAPKEDTLVVSLEQSGKTFINSSEI
SQDQLKEKLTSMLAGREKREVFLKADQAVPYGEVVKVMAQIKGAGVERLGMVTESPQRR

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=130, Percent_Identity=36.1538461538462, Blast_Score=93, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014168
- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15309; Mature: 15309

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFGNRDNGDRGTMSQINVTPLVDVMLVLLIIFMVTAPMMQQGVQVNLPKADTKALAPKE
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC
DTLVVSLEQSGKTFINSSEISQDQLKEKLTSMLAGREKREVFLKADQAVPYGEVVKVMAQ
CEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHH
IKGAGVERLGMVTESPQRR
HHCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MEFGNRDNGDRGTMSQINVTPLVDVMLVLLIIFMVTAPMMQQGVQVNLPKADTKALAPKE
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC
DTLVVSLEQSGKTFINSSEISQDQLKEKLTSMLAGREKREVFLKADQAVPYGEVVKVMAQ
CEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHH
IKGAGVERLGMVTESPQRR
HHCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8955385; 10984043 [H]