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The map label for this gene is yebA [H]

Identifier: 197119862

GI number: 197119862

Start: 4010409

End: 4011755

Strand: Direct

Name: yebA [H]

Synonym: Gbem_3500

Alternate gene names: 197119862

Gene position: 4010409-4011755 (Clockwise)

Preceding gene: 308535371

Following gene: 197119863

Centisome position: 86.9

GC content: 62.66

Gene sequence:

>1347_bases
ATGAGAACTTCGGCAATCCTCGGGTTATTTTTCTTGTTTGTCGTCATCGCAGCAGGGATCGGGATCTATTACTTCGTCGA
CACCTCCGGCCCGGCCCTGGCGCTTTCCCGTCGCCCTGGCCCTATCGCCTCCAGGGCAGACCTGATCCTGACCCTGCGGG
ACCGCGCTTCGGGCCTCAAATCCCTGAACGTGCAGGCGGTGCAGAGAGAAAAGAGCTTCACCATCCTGAACAAGGAGTAC
GCCGCCGGGACCACCGACGCGAAGGAGACCTTCCGGCTCCCGCCCCCCCCCGGACTGAAAGAGGGCCCGGTGACACTGCG
GATAGCGGCTTCCGACCGCTCCGTCTTCAGGTTCGGCTCGGGCAACAGCACCTCCGTGGCGCTGGAGTTCGTGGTGCAGA
ACAAGCCCCCTGTGGTAACCGTGCTCAGCACCGCGCACAACGTCTCCCCGGGAGGCTCCGCCCTGGCCGCATACACGCTG
AACCGTGACGTGGTCAAGACCGGCGTCACCTTCGCGGACAGGTTCTATCCCGGTTACAAGCAGCCCGAGGGGTACTACGC
CTCCCTGTTTCCGTTCCCCTACGACGTCCCCCCGGAACGCTTCATACCCAAAGTCTTTGCGATGGACCAGGCGGGGAACG
AACGGCTTACCGGGATCTACTACCGGATCCTGGCGAAGAGCTTCCCGAAGGACCGCATCGAGCTGAGCGACGCCTTCCTG
GAGAAGATCTTCACCGAATTCAAGGACCGCTTCCCCCAGATAAAGAACCCGCTAGAGCTGTTCCTGAAGGTGAACCGGGA
GGTGCGGCAAAGCGACGCGAAGATACTGCAGCAGTGCAGCCTGAAAACCTCCCCCACCCCTCTTTGGGAAGGGGAGTTCA
TGCGCCTCCCCAACTCCGCCCCGCGCGGCAGCTTCAACCAGTTGCGCAGCTACTATTACCAGGGAAAAGAGGTGGACCAG
CAACATCACCTGGGAATCGACCTGGCCTCGCTTTCCCACGCCAAGGTTCCCGCGGCCAACCGCGGCAAGGTGGTATATGC
CGACGACCTGGGGATCTACGGCCAGTGCATCATCATCGACCATGGGATGGGGCTGCAGAGCCTGTACGGCCACCTGAGCC
GGATCGGCGTGAAGGAAGGGGACCTGGTGAAAAAGGGGGACATCATCGGCGACACCGGGGACACCGGGCTTGCGGGGGGG
GACCACCTGCATTTCGGCGTGGTGGTGTCGGGCCAGGAGGTGAACCCGATCGAATGGTGGGACCCGTCCTGGATCAAGAA
CAACGTCACGGACAAGTTGAAAGACGCAAGGGAAGCCGCGGCTGCGGCCGCCGGGGCCGCGAAGTAG

Upstream 100 bases:

>100_bases
TTAACCGGGGCAAATGCCCCGAACCACGGATCCCGGCAAAGCCGCCCTGCCAAGCGGAATGTCCGGGTACCTACTCCAGC
GCTGAAAGCGGGGGCCTCCC

Downstream 100 bases:

>100_bases
GGCGATGGATGGGGCGGCCGGAAGACAGCGGAGGTAAAGGATGCATCAACTGGTGCTGCTGCGACATGGCGAAAGCGTCT
GGAACAAGGAGAACCTCTTC

Product: zinc metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MRTSAILGLFFLFVVIAAGIGIYYFVDTSGPALALSRRPGPIASRADLILTLRDRASGLKSLNVQAVQREKSFTILNKEY
AAGTTDAKETFRLPPPPGLKEGPVTLRIAASDRSVFRFGSGNSTSVALEFVVQNKPPVVTVLSTAHNVSPGGSALAAYTL
NRDVVKTGVTFADRFYPGYKQPEGYYASLFPFPYDVPPERFIPKVFAMDQAGNERLTGIYYRILAKSFPKDRIELSDAFL
EKIFTEFKDRFPQIKNPLELFLKVNREVRQSDAKILQQCSLKTSPTPLWEGEFMRLPNSAPRGSFNQLRSYYYQGKEVDQ
QHHLGIDLASLSHAKVPAANRGKVVYADDLGIYGQCIIIDHGMGLQSLYGHLSRIGVKEGDLVKKGDIIGDTGDTGLAGG
DHLHFGVVVSGQEVNPIEWWDPSWIKNNVTDKLKDAREAAAAAAGAAK

Sequences:

>Translated_448_residues
MRTSAILGLFFLFVVIAAGIGIYYFVDTSGPALALSRRPGPIASRADLILTLRDRASGLKSLNVQAVQREKSFTILNKEY
AAGTTDAKETFRLPPPPGLKEGPVTLRIAASDRSVFRFGSGNSTSVALEFVVQNKPPVVTVLSTAHNVSPGGSALAAYTL
NRDVVKTGVTFADRFYPGYKQPEGYYASLFPFPYDVPPERFIPKVFAMDQAGNERLTGIYYRILAKSFPKDRIELSDAFL
EKIFTEFKDRFPQIKNPLELFLKVNREVRQSDAKILQQCSLKTSPTPLWEGEFMRLPNSAPRGSFNQLRSYYYQGKEVDQ
QHHLGIDLASLSHAKVPAANRGKVVYADDLGIYGQCIIIDHGMGLQSLYGHLSRIGVKEGDLVKKGDIIGDTGDTGLAGG
DHLHFGVVVSGQEVNPIEWWDPSWIKNNVTDKLKDAREAAAAAAGAAK
>Mature_448_residues
MRTSAILGLFFLFVVIAAGIGIYYFVDTSGPALALSRRPGPIASRADLILTLRDRASGLKSLNVQAVQREKSFTILNKEY
AAGTTDAKETFRLPPPPGLKEGPVTLRIAASDRSVFRFGSGNSTSVALEFVVQNKPPVVTVLSTAHNVSPGGSALAAYTL
NRDVVKTGVTFADRFYPGYKQPEGYYASLFPFPYDVPPERFIPKVFAMDQAGNERLTGIYYRILAKSFPKDRIELSDAFL
EKIFTEFKDRFPQIKNPLELFLKVNREVRQSDAKILQQCSLKTSPTPLWEGEFMRLPNSAPRGSFNQLRSYYYQGKEVDQ
QHHLGIDLASLSHAKVPAANRGKVVYADDLGIYGQCIIIDHGMGLQSLYGHLSRIGVKEGDLVKKGDIIGDTGDTGLAGG
DHLHFGVVVSGQEVNPIEWWDPSWIKNNVTDKLKDAREAAAAAAGAAK

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=128, Percent_Identity=35.15625, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49175; Mature: 49175

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00055 RIBOSOMAL_S12

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSAILGLFFLFVVIAAGIGIYYFVDTSGPALALSRRPGPIASRADLILTLRDRASGLK
CCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEEECHHHCCHH
SLNVQAVQREKSFTILNKEYAAGTTDAKETFRLPPPPGLKEGPVTLRIAASDRSVFRFGS
HCCHHHHHHCCCEEEEEHHHCCCCCCHHHCEECCCCCCCCCCCEEEEEEECCCCEEEECC
GNSTSVALEFVVQNKPPVVTVLSTAHNVSPGGSALAAYTLNRDVVKTGVTFADRFYPGYK
CCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHCCHHHHHCCCCCC
QPEGYYASLFPFPYDVPPERFIPKVFAMDQAGNERLTGIYYRILAKSFPKDRIELSDAFL
CCCCCEEEECCCCCCCCHHHHCCHHHEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
EKIFTEFKDRFPQIKNPLELFLKVNREVRQSDAKILQQCSLKTSPTPLWEGEFMRLPNSA
HHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCC
PRGSFNQLRSYYYQGKEVDQQHHLGIDLASLSHAKVPAANRGKVVYADDLGIYGQCIIID
CCCCHHHHHHHHHCCCCCCCHHHCCEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEEE
HGMGLQSLYGHLSRIGVKEGDLVKKGDIIGDTGDTGLAGGDHLHFGVVVSGQEVNPIEWW
CCCCHHHHHHHHHHCCCCCCCEEECCCEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
DPSWIKNNVTDKLKDAREAAAAAAGAAK
CCHHHHCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRTSAILGLFFLFVVIAAGIGIYYFVDTSGPALALSRRPGPIASRADLILTLRDRASGLK
CCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEEECHHHCCHH
SLNVQAVQREKSFTILNKEYAAGTTDAKETFRLPPPPGLKEGPVTLRIAASDRSVFRFGS
HCCHHHHHHCCCEEEEEHHHCCCCCCHHHCEECCCCCCCCCCCEEEEEEECCCCEEEECC
GNSTSVALEFVVQNKPPVVTVLSTAHNVSPGGSALAAYTLNRDVVKTGVTFADRFYPGYK
CCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHCCHHHHHCCCCCC
QPEGYYASLFPFPYDVPPERFIPKVFAMDQAGNERLTGIYYRILAKSFPKDRIELSDAFL
CCCCCEEEECCCCCCCCHHHHCCHHHEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
EKIFTEFKDRFPQIKNPLELFLKVNREVRQSDAKILQQCSLKTSPTPLWEGEFMRLPNSA
HHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCC
PRGSFNQLRSYYYQGKEVDQQHHLGIDLASLSHAKVPAANRGKVVYADDLGIYGQCIIID
CCCCHHHHHHHHHCCCCCCCHHHCCEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEEE
HGMGLQSLYGHLSRIGVKEGDLVKKGDIIGDTGDTGLAGGDHLHFGVVVSGQEVNPIEWW
CCCCHHHHHHHHHHCCCCCCCEEECCCEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
DPSWIKNNVTDKLKDAREAAAAAAGAAK
CCHHHHCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]