| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is thiE/thiD [H]
Identifier: 197119824
GI number: 197119824
Start: 3975447
End: 3976901
Strand: Direct
Name: thiE/thiD [H]
Synonym: Gbem_3462
Alternate gene names: 197119824
Gene position: 3975447-3976901 (Clockwise)
Preceding gene: 308535366
Following gene: 197119825
Centisome position: 86.14
GC content: 66.67
Gene sequence:
>1455_bases GTGCTAAGACTCGTGGTGGATCATAGTGGCAAGGAGCGGCGCATAGGGGGGCTCTACCTCATCACGGATCAAGCTGAGCG CCTGGTCCACCGCGTGCGCGAGGCGCTCTCCTCGGGAGGGGTCGCCGTCCTGCAGTACCGGGACAAGGTCCGCAGCTACG AGGAACGCCTGGAACTGGGACAGGAGCTGAAACACCTCTGCACGGAATTCCAGGTGGAATTCATCGTCAACGACGACGTC GAACTGGCCTTCGCCCTCGACGCCGACGGCGTCCATCTGGGGCAGGACGACGGCGACCCGGCCGCGGCACGCGAGGCGCT CGGCCCCAAAAAGATGATCGGGATCTCGACCCATTCGCTCACGGAAGCGCTCGAGGCGCAGGAGGCCGGCGCCGACTACG TCGGCTTCGGAGCCATCTACCCCACCGACAGCAAGGAGGTCGAGCATATCCAGGGGCCGGAGAAGCTCGTGCTTTTGAAG GAAAAGCTGAGGATACCGGTGGTCGCCATCGGCGGCATCACCAGGGACAACGCCTGCGCGGTGATCGACGCCGGAGCCGA CGCCATCGCGGTGATCTCGGCGGTGCTGTCGGCCAGATCCCCCGCGCTCGCCGCGACGGAACTGGCGCTCCTCTTCAACA GGAAGGCGATGCAGCCGCGCGGCGGCGTGCTCACCGTGGCCGGGAGCGACTCGGGAGGGGGCGCCGGCATCCAGGCGGAC CTGAAGACTGTGACGCTTTTGGGAAGCTACGGCGCCTCTGCCGTCACCGCGCTTACCGCACAGAACACCCGCGGCGTTAC CGCCATCCATCCGGTCCCGGCCGCCTTCCTCGCGGAACAGATCGACGCGGTCCTTACGGACATCCCGATCGACGTGGTGA AGGTAGGGATGCTCTCCTCGGCCGAGAACGCCGCCACCCTCGCCGACAGGCTCACCGACCACGGCGTGAGGATGGTGGTG CTCGACCCGGTGATGAGCGCCAAGGGGGGGGTAGCGCTCATGGAGGACGAGGCGCTAGGCGTCCTGAAACAGAGGCTCAT CCCGCTTTGCTACCTGCTCACGCCGAACATCCCGGAGGCCGAGGCCCTCACCGGGCTCACCATCACCGATACGGCCGGCA TGGAACTAGCTGCTCGGGCTCTGCACCTCATGGGGGCAAAGCACGTGCTGGTCAAGGGGGGGCACCTGACCGAGGGGGTA GTCACCGACATCCTCTTCGACGGCGCCGGCTTCACCCGCTTCACGGCTCCGCGCGTACTCACCCGCAACACCCACGGCAC CGGCTGCACGCTGGCCTCGGCAATAGCAAGCTATCTAGCCCAGGGGGAACCGCTCCCCGGCGCGGTGCTCCGGGCGAAGC TCTTCGTCACCCGCGCCATCAAGTACGCCCAACCGCTGGGAAAGGGGCACGGCCCCGTGAACCATTTCATGGCGGCAAGA GACCAGGCCGAATAA
Upstream 100 bases:
>100_bases GACTTTGCTTTTAGCTTCTCTCCGGTTCTGTTTATTCTCAGATGTGCTCAGATTTTCTCCTTGTTAGAGGTTTGGTTTCT CCAGTTTCTCTGAGGTTACC
Downstream 100 bases:
>100_bases ACCAGGGGCTAGGGGCTGGGAATTTTCATCGACACGACAAGAAGCAAGTTCAATAAAGGAGTAGACATGACTCAGCTCGA ATACGCCCGCAAGGGGATCA
Product: bifunctional 4-amino-5-hydroxymethyl-2-methylpyrimidine-phosphate kinase/thiamin monophosphate synthase
Products: NA
Alternate protein names: Thiamine-phosphate pyrophosphorylase; TMP pyrophosphorylase; TMP-PPase; Thiamine-phosphate synthase; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase [H]
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MLRLVVDHSGKERRIGGLYLITDQAERLVHRVREALSSGGVAVLQYRDKVRSYEERLELGQELKHLCTEFQVEFIVNDDV ELAFALDADGVHLGQDDGDPAAAREALGPKKMIGISTHSLTEALEAQEAGADYVGFGAIYPTDSKEVEHIQGPEKLVLLK EKLRIPVVAIGGITRDNACAVIDAGADAIAVISAVLSARSPALAATELALLFNRKAMQPRGGVLTVAGSDSGGGAGIQAD LKTVTLLGSYGASAVTALTAQNTRGVTAIHPVPAAFLAEQIDAVLTDIPIDVVKVGMLSSAENAATLADRLTDHGVRMVV LDPVMSAKGGVALMEDEALGVLKQRLIPLCYLLTPNIPEAEALTGLTITDTAGMELAARALHLMGAKHVLVKGGHLTEGV VTDILFDGAGFTRFTAPRVLTRNTHGTGCTLASAIASYLAQGEPLPGAVLRAKLFVTRAIKYAQPLGKGHGPVNHFMAAR DQAE
Sequences:
>Translated_484_residues MLRLVVDHSGKERRIGGLYLITDQAERLVHRVREALSSGGVAVLQYRDKVRSYEERLELGQELKHLCTEFQVEFIVNDDV ELAFALDADGVHLGQDDGDPAAAREALGPKKMIGISTHSLTEALEAQEAGADYVGFGAIYPTDSKEVEHIQGPEKLVLLK EKLRIPVVAIGGITRDNACAVIDAGADAIAVISAVLSARSPALAATELALLFNRKAMQPRGGVLTVAGSDSGGGAGIQAD LKTVTLLGSYGASAVTALTAQNTRGVTAIHPVPAAFLAEQIDAVLTDIPIDVVKVGMLSSAENAATLADRLTDHGVRMVV LDPVMSAKGGVALMEDEALGVLKQRLIPLCYLLTPNIPEAEALTGLTITDTAGMELAARALHLMGAKHVLVKGGHLTEGV VTDILFDGAGFTRFTAPRVLTRNTHGTGCTLASAIASYLAQGEPLPGAVLRAKLFVTRAIKYAQPLGKGHGPVNHFMAAR DQAE >Mature_484_residues MLRLVVDHSGKERRIGGLYLITDQAERLVHRVREALSSGGVAVLQYRDKVRSYEERLELGQELKHLCTEFQVEFIVNDDV ELAFALDADGVHLGQDDGDPAAAREALGPKKMIGISTHSLTEALEAQEAGADYVGFGAIYPTDSKEVEHIQGPEKLVLLK EKLRIPVVAIGGITRDNACAVIDAGADAIAVISAVLSARSPALAATELALLFNRKAMQPRGGVLTVAGSDSGGGAGIQAD LKTVTLLGSYGASAVTALTAQNTRGVTAIHPVPAAFLAEQIDAVLTDIPIDVVKVGMLSSAENAATLADRLTDHGVRMVV LDPVMSAKGGVALMEDEALGVLKQRLIPLCYLLTPNIPEAEALTGLTITDTAGMELAARALHLMGAKHVLVKGGHLTEGV VTDILFDGAGFTRFTAPRVLTRNTHGTGCTLASAIASYLAQGEPLPGAVLRAKLFVTRAIKYAQPLGKGHGPVNHFMAAR DQAE
Specific function: Catalyzes the phosphorylation of hydroxymethylpyrimidine phosphate (HMP-P) to HMP-PP, and of HMP to HMP-P [H]
COG id: COG0351
COG function: function code H; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the thiD family [H]
Homologues:
Organism=Escherichia coli, GI1788420, Length=262, Percent_Identity=45.8015267175573, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1790426, Length=194, Percent_Identity=34.5360824742268, Blast_Score=79, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6325378, Length=273, Percent_Identity=35.1648351648352, Blast_Score=140, Evalue=4e-34, Organism=Saccharomyces cerevisiae, GI6324997, Length=272, Percent_Identity=37.5, Blast_Score=129, Evalue=7e-31, Organism=Saccharomyces cerevisiae, GI6324517, Length=274, Percent_Identity=36.1313868613139, Blast_Score=128, Evalue=2e-30, Organism=Saccharomyces cerevisiae, GI6325042, Length=221, Percent_Identity=30.316742081448, Blast_Score=92, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR013749 - InterPro: IPR004399 - InterPro: IPR022998 - InterPro: IPR003733 [H]
Pfam domain/function: PF08543 Phos_pyr_kin; PF02581 TMP-TENI [H]
EC number: =2.5.1.3; =2.7.1.49; =2.7.4.7 [H]
Molecular weight: Translated: 50909; Mature: 50909
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRLVVDHSGKERRIGGLYLITDQAERLVHRVREALSSGGVAVLQYRDKVRSYEERLELG CEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH QELKHLCTEFQVEFIVNDDVELAFALDADGVHLGQDDGDPAAAREALGPKKMIGISTHSL HHHHHHHHHEEEEEEECCCCEEEEEECCCCEECCCCCCCHHHHHHHCCCHHEEECCHHHH TEALEAQEAGADYVGFGAIYPTDSKEVEHIQGPEKLVLLKEKLRIPVVAIGGITRDNACA HHHHHHHHCCCCEEECCEECCCCCCHHHHHCCCHHEEEEHHHHCCCEEEECCCCCCCCEE VIDAGADAIAVISAVLSARSPALAATELALLFNRKAMQPRGGVLTVAGSDSGGGAGIQAD EEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEC LKTVTLLGSYGASAVTALTAQNTRGVTAIHPVPAAFLAEQIDAVLTDIPIDVVKVGMLSS CEEEEEEECCCCHHEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC AENAATLADRLTDHGVRMVVLDPVMSAKGGVALMEDEALGVLKQRLIPLCYLLTPNIPEA CCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHEEEEECCCCCCH EALTGLTITDTAGMELAARALHLMGAKHVLVKGGHLTEGVVTDILFDGAGFTRFTAPRVL HHHCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCEECCCCEE TRNTHGTGCTLASAIASYLAQGEPLPGAVLRAKLFVTRAIKYAQPLGKGHGPVNHFMAAR ECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC DQAE CCCC >Mature Secondary Structure MLRLVVDHSGKERRIGGLYLITDQAERLVHRVREALSSGGVAVLQYRDKVRSYEERLELG CEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH QELKHLCTEFQVEFIVNDDVELAFALDADGVHLGQDDGDPAAAREALGPKKMIGISTHSL HHHHHHHHHEEEEEEECCCCEEEEEECCCCEECCCCCCCHHHHHHHCCCHHEEECCHHHH TEALEAQEAGADYVGFGAIYPTDSKEVEHIQGPEKLVLLKEKLRIPVVAIGGITRDNACA HHHHHHHHCCCCEEECCEECCCCCCHHHHHCCCHHEEEEHHHHCCCEEEECCCCCCCCEE VIDAGADAIAVISAVLSARSPALAATELALLFNRKAMQPRGGVLTVAGSDSGGGAGIQAD EEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEC LKTVTLLGSYGASAVTALTAQNTRGVTAIHPVPAAFLAEQIDAVLTDIPIDVVKVGMLSS CEEEEEEECCCCHHEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC AENAATLADRLTDHGVRMVVLDPVMSAKGGVALMEDEALGVLKQRLIPLCYLLTPNIPEA CCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHEEEEECCCCCCH EALTGLTITDTAGMELAARALHLMGAKHVLVKGGHLTEGVVTDILFDGAGFTRFTAPRVL HHHCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCEECCCCEE TRNTHGTGCTLASAIASYLAQGEPLPGAVLRAKLFVTRAIKYAQPLGKGHGPVNHFMAAR ECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC DQAE CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA