Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 197119769

GI number: 197119769

Start: 3923707

End: 3924882

Strand: Direct

Name: lptF [H]

Synonym: Gbem_3407

Alternate gene names: 197119769

Gene position: 3923707-3924882 (Clockwise)

Preceding gene: 308535364

Following gene: 197119770

Centisome position: 85.02

GC content: 60.29

Gene sequence:

>1176_bases
ATGCCGAACTTCATGAAAAAGACCCTGTACGCTTACATCTTCAAGGAAATCCCCACCCCTTTCCTGGTCGGCATGGTGAC
CTTCACCTTCGTGCTCCTCATGGGACGCTTTCTCAAGCTCGCCGAGATGGTGGTAGAGAAAGGGATCCCCTTCAGCGACG
TGGTGCGGATGGTGGCCTATCTACTCCCCCCTTTCTGGCTCTTCACCATACCGATGGCGCTTTTGCTCGCCATGCTGCTT
GCCTTCGGCCGCCTTTCCGGCGACAGCGAAATCACCGCCATGAAGAGTTGCGGCATCAGTCTCTACGGGCTACTCCCCCC
CCCAATGCTATTCGCCGCCTGCGCCACCCTCGCCTGTCTGTGGGTCACCGTTTACGCCGTTCCCTGGGGGAACTCCGGCT
TCAAGAAGCTGATGGTGGAGATTGCCCAGAGCAGCGCCGGGATCGCCATCAAAGAGAAGATCTTCAACAACGCCTTCCCC
GGCATGGTGGTCTACACGCAATCACTAGACACCAAGGCGCAGACCATGGGGGGAGTTATCGTCCACGACGAGAGGGACCC
GCGCACCCCGACCACCATCTTCGCTTCCACCGGCGCCCTGGTATCCGACCCGAAAAGCAACTCAATGGAGTTCCAGTTGC
GCAACGGCTCCATCCACCGTGCCGAAGAGCAGGGGGGGTACCGGATGGTGCAGTTCCAGGAATACAACCTCCGGGTCGCG
CTCGCCGACGGCAGCAACAAGGCGACCAGGAAAGTGAGCGAGATGACGCTCGACGAGTTGCTCCACCCTCCCAAGGGAAC
GCAGCAAAAGGAGATCATCTCCAGGGACCTCGAATACCACAGCCGCCTGGCACTCCCGTTCTCCTGTTTCGTCTTTACGC
TTTTGGCCATACCGCTGGGGATCCAGAACCGGCGCTCGGGGAAGGCTGCCGGGTTCTCTTTGAGCATCGGCGTCATCCTC
CTTTACTACGTAACCCTCTCCGCCTTCGATACGCTGGGCGAGCGGGGCACGCTGCCGCCGCTGCTTGCCGGGTGGAGCCC
GAACTTGATCTTCCTTCTGGCTGGGGCCTACCTGTTCAAGAAGACCTCCGACGAGGAGCGTCTCCCCATCTTCTCTCTTT
ACCCGCGCCTCAAGGAGGCGTTGCGGGGACGCCTTAGCAAGGGGAGGAAGCGATGA

Upstream 100 bases:

>100_bases
CTTTTACCCCAAAGCAAAAACAAAGGTCAAGCGACAATGAGATCGAGCCCTCCCCTTCCCCCCCTGTCCTTCCTTTACTT
CGCCCCCCATCTAAGGTATC

Downstream 100 bases:

>100_bases
ACATCCTCACCCGCTACATCGCCCGGGCCTATGTAAAGATGCTCTCGCTCTGCCTCGGCTCCTTCATCGCCATCTACCTG
GTGGTGGACTTCATGGAGAA

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPNFMKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGIPFSDVVRMVAYLLPPFWLFTIPMALLLAMLL
AFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACLWVTVYAVPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFP
GMVVYTQSLDTKAQTMGGVIVHDERDPRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEQGGYRMVQFQEYNLRVA
LADGSNKATRKVSEMTLDELLHPPKGTQQKEIISRDLEYHSRLALPFSCFVFTLLAIPLGIQNRRSGKAAGFSLSIGVIL
LYYVTLSAFDTLGERGTLPPLLAGWSPNLIFLLAGAYLFKKTSDEERLPIFSLYPRLKEALRGRLSKGRKR

Sequences:

>Translated_391_residues
MPNFMKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGIPFSDVVRMVAYLLPPFWLFTIPMALLLAMLL
AFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACLWVTVYAVPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFP
GMVVYTQSLDTKAQTMGGVIVHDERDPRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEQGGYRMVQFQEYNLRVA
LADGSNKATRKVSEMTLDELLHPPKGTQQKEIISRDLEYHSRLALPFSCFVFTLLAIPLGIQNRRSGKAAGFSLSIGVIL
LYYVTLSAFDTLGERGTLPPLLAGWSPNLIFLLAGAYLFKKTSDEERLPIFSLYPRLKEALRGRLSKGRKR
>Mature_390_residues
PNFMKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGIPFSDVVRMVAYLLPPFWLFTIPMALLLAMLLA
FGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACLWVTVYAVPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFPG
MVVYTQSLDTKAQTMGGVIVHDERDPRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEQGGYRMVQFQEYNLRVAL
ADGSNKATRKVSEMTLDELLHPPKGTQQKEIISRDLEYHSRLALPFSCFVFTLLAIPLGIQNRRSGKAAGFSLSIGVILL
YYVTLSAFDTLGERGTLPPLLAGWSPNLIFLLAGAYLFKKTSDEERLPIFSLYPRLKEALRGRLSKGRKR

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=290, Percent_Identity=24.1379310344828, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 43456; Mature: 43325

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNFMKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGIPFSDVVRMVAY
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LLPPFWLFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACL
HHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
WVTVYAVPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFPGMVVYTQSLDTKAQTMGGVI
HHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHCCEE
VHDERDPRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEQGGYRMVQFQEYNLRVA
EECCCCCCCCCEEEEECCCEECCCCCCCEEEEEECCCEECHHHCCCEEEEEEEECCEEEE
LADGSNKATRKVSEMTLDELLHPPKGTQQKEIISRDLEYHSRLALPFSCFVFTLLAIPLG
EECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
IQNRRSGKAAGFSLSIGVILLYYVTLSAFDTLGERGTLPPLLAGWSPNLIFLLAGAYLFK
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHH
KTSDEERLPIFSLYPRLKEALRGRLSKGRKR
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PNFMKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGIPFSDVVRMVAY
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LLPPFWLFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACL
HHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
WVTVYAVPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFPGMVVYTQSLDTKAQTMGGVI
HHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHCCEE
VHDERDPRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEQGGYRMVQFQEYNLRVA
EECCCCCCCCCEEEEECCCEECCCCCCCEEEEEECCCEECHHHCCCEEEEEEEECCEEEE
LADGSNKATRKVSEMTLDELLHPPKGTQQKEIISRDLEYHSRLALPFSCFVFTLLAIPLG
EECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
IQNRRSGKAAGFSLSIGVILLYYVTLSAFDTLGERGTLPPLLAGWSPNLIFLLAGAYLFK
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHH
KTSDEERLPIFSLYPRLKEALRGRLSKGRKR
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]