| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is cphA [H]
Identifier: 197119537
GI number: 197119537
Start: 3649540
End: 3650448
Strand: Direct
Name: cphA [H]
Synonym: Gbem_3167
Alternate gene names: 197119537
Gene position: 3649540-3650448 (Clockwise)
Preceding gene: 197119536
Following gene: 308535354
Centisome position: 79.08
GC content: 58.86
Gene sequence:
>909_bases ATGAAAAAGACAGCCGCACTTGCCGCACTCTCCGCACTGGTCCTCACCCTGCTGTTCGTTAACAGCGCCTGCGCGGAACT CACCAAGATATCCAACAACGTCTATTCCTACGTCGGCGTAAAGGATGCATCCCCCGGCAACAGCTTCGCCGCCAACGCAG GGATCGTCATCGGGCGGGACGGTGTCCTCGTCGTCGACACGCTGATCTCCGCCAAAGAAGGAAAGCGTTTCCTGGCCGAC ATCCGCAAGGTCACCAATAAGCCGATCAAGTACGTCGTCAACACCCACACCCATCTCGACCACGCCCTGGGGAACTGCGT CTTCGCCAATCTGGGCGCCGCCATCATCTCCCACCAGGCGGAGCGGGCCAGTTTAGAGGCGAACGGGCCGCTGATGCTGC GCAACATCGGGAGCAAGGGGCTGAAACCTGAGGACGTGGCCGGTACCGAGGTCGTGCTCCCTAACCTCGCCTTCAGCGAT CAGATGCTGATAGACCTGGGAGGGGAGGAGATCCGGCTGATCCGTTTGTCGCCCTCGCACACCGCCGGAAGCATCGTGGT CTACCTCCCGACGCAGAAGATCCTTTTCAGCGGCGACATCCTCTTCACCGATTTCCATCCCTTTCTTGCCGACGGCGATT TCAAAGGGTGGATCGGCAGCATCGACAAACTGCTCGACATGGAGATCGACGGCATCATCCCGGGGCACGGCCCGCTTTCC ACCAAGAAGGACCTCCGGGACATGAAGAATTACATCGTCCTGTTCGACAAGAGGGCGCGGGAGCTGGCCACGAAATCGCA GGATTCCCAGGTCATTTCCGCGCAGTTATTGAAAGAACTGCCGAAGCGCTCCATGGCTGAATGGATGGTGAACTACAACG TGCTCAGCAGGTACATCGGGAAAAACTAG
Upstream 100 bases:
>100_bases GGTAGCACCTCGAAAGAAAAATAAGCCCGGACGCACCTGCCCGATATCGAGCCGTTATCCCATGTGATGCTTAAATCAAA ATGCAAAAGGAGAACTTCGG
Downstream 100 bases:
>100_bases GCGCAGCACTGCGCCGCCAAGCGACGACAGAAAAAGGGGACAGGCTACTTTTCGATTCGAAAAAGTAGCCTGTCCCCTTT TATCTTCCAGTCACCTGTTT
Product: glyoxylase-like zinc-dependent hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MKKTAALAALSALVLTLLFVNSACAELTKISNNVYSYVGVKDASPGNSFAANAGIVIGRDGVLVVDTLISAKEGKRFLAD IRKVTNKPIKYVVNTHTHLDHALGNCVFANLGAAIISHQAERASLEANGPLMLRNIGSKGLKPEDVAGTEVVLPNLAFSD QMLIDLGGEEIRLIRLSPSHTAGSIVVYLPTQKILFSGDILFTDFHPFLADGDFKGWIGSIDKLLDMEIDGIIPGHGPLS TKKDLRDMKNYIVLFDKRARELATKSQDSQVISAQLLKELPKRSMAEWMVNYNVLSRYIGKN
Sequences:
>Translated_302_residues MKKTAALAALSALVLTLLFVNSACAELTKISNNVYSYVGVKDASPGNSFAANAGIVIGRDGVLVVDTLISAKEGKRFLAD IRKVTNKPIKYVVNTHTHLDHALGNCVFANLGAAIISHQAERASLEANGPLMLRNIGSKGLKPEDVAGTEVVLPNLAFSD QMLIDLGGEEIRLIRLSPSHTAGSIVVYLPTQKILFSGDILFTDFHPFLADGDFKGWIGSIDKLLDMEIDGIIPGHGPLS TKKDLRDMKNYIVLFDKRARELATKSQDSQVISAQLLKELPKRSMAEWMVNYNVLSRYIGKN >Mature_302_residues MKKTAALAALSALVLTLLFVNSACAELTKISNNVYSYVGVKDASPGNSFAANAGIVIGRDGVLVVDTLISAKEGKRFLAD IRKVTNKPIKYVVNTHTHLDHALGNCVFANLGAAIISHQAERASLEANGPLMLRNIGSKGLKPEDVAGTEVVLPNLAFSD QMLIDLGGEEIRLIRLSPSHTAGSIVVYLPTQKILFSGDILFTDFHPFLADGDFKGWIGSIDKLLDMEIDGIIPGHGPLS TKKDLRDMKNYIVLFDKRARELATKSQDSQVISAQLLKELPKRSMAEWMVNYNVLSRYIGKN
Specific function: Can hydrolyze carbapenem compounds [H]
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-B beta-lactamase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001018 - InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: =3.5.2.6 [H]
Molecular weight: Translated: 32832; Mature: 32832
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTAALAALSALVLTLLFVNSACAELTKISNNVYSYVGVKDASPGNSFAANAGIVIGRD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECCC GVLVVDTLISAKEGKRFLADIRKVTNKPIKYVVNTHTHLDHALGNCVFANLGAAIISHQA CEEEEHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCH ERASLEANGPLMLRNIGSKGLKPEDVAGTEVVLPNLAFSDQMLIDLGGEEIRLIRLSPSH HHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCEEEEEEECCCC TAGSIVVYLPTQKILFSGDILFTDFHPFLADGDFKGWIGSIDKLLDMEIDGIIPGHGPLS CCCEEEEEECCCEEEEECCEEEEECCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC TKKDLRDMKNYIVLFDKRARELATKSQDSQVISAQLLKELPKRSMAEWMVNYNVLSRYIG CHHHHHHHHHHEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KN CC >Mature Secondary Structure MKKTAALAALSALVLTLLFVNSACAELTKISNNVYSYVGVKDASPGNSFAANAGIVIGRD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECCC GVLVVDTLISAKEGKRFLADIRKVTNKPIKYVVNTHTHLDHALGNCVFANLGAAIISHQA CEEEEHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCH ERASLEANGPLMLRNIGSKGLKPEDVAGTEVVLPNLAFSDQMLIDLGGEEIRLIRLSPSH HHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCEEEEEEECCCC TAGSIVVYLPTQKILFSGDILFTDFHPFLADGDFKGWIGSIDKLLDMEIDGIIPGHGPLS CCCEEEEEECCCEEEEECCEEEEECCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC TKKDLRDMKNYIVLFDKRARELATKSQDSQVISAQLLKELPKRSMAEWMVNYNVLSRYIG CHHHHHHHHHHEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KN CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1856163 [H]