| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is icaA [H]
Identifier: 197118162
GI number: 197118162
Start: 2048695
End: 2051103
Strand: Direct
Name: icaA [H]
Synonym: Gbem_1777
Alternate gene names: 197118162
Gene position: 2048695-2051103 (Clockwise)
Preceding gene: 197118161
Following gene: 197118163
Centisome position: 44.39
GC content: 59.15
Gene sequence:
>2409_bases ATGGTATGGACCGAAATCACCATGATTGCGCTGCTTTTGCTCCTGGCCTACATATACCTGGGGTACCCGCTACTTCTTTG CCTGCTGGCGCGCCTCATCCCCACGACCCACCGTACCGATGACGGTTTTCTTCCCACGGTCACTCTGGTCATTTCCGCCT ACAACGAAAAAGGGGTTATCAGGGCGAAACTGGAAAATTCGCTGGCCCTTGACTACCCGCAGGAAAGGCTCTCCATCTTG GTCGTGTCCGACTGCTCCAGCGACGGGACTGACACGGAGGTGCTCTCTTTCTCGGACAAAGGGGTGAAGCTCATGAGGGC AGAGGAGCGCCGGGGGAAGACGTCGGCCATCAACACGGCGCTTGCCTGTGTCGATAGTGAGATGGTGGTCTTCTCCGACG CCAACGCCATCTACGACGCAACGGCCATCCGCCGGTTGGTGCGGCATTTCGTCGATCCAAGCATTGGTTACGTCGTCGGA TGCGCCCGATACGTGGAGGAGACCGTCAGCGCCGCCGGCGGCAGCGAAAGTACTTACTGGGACCTCGAGGTGATGCTGAA ACGGTGGGAATCGCGCCTTTCATCAGTGGTTGGAGGGGACGGAGCCATCTATGCGATTCGCCGCTCGCTATACGAGCCAC TTAAGGAAGAGGACATCAACGACTTCGTCAACCCCCTTCAGATCGTCGCCAAGGGGTACCGCGGCGTCTTCGACGAGGAG GCGTGGTGCGTGGAGCGTCCCGCCGGTGAATTCCATAAGGAGTTTTCCCGAAAGGTGCGTATCGTGAACCGCAGTTTCAG CGGGTTTTTGCGGGTGCCCCGGGCGGCGAACCCAATGGTCACTGGAGCCTTTGCCTGGCAGCTCGTTTCCCACAAGCTCC TGCGCTGGTTTTCCCCCTGTTTTCTCGGCCTGTTTTTTGTCTTCCTGGTGCTGAACCGGCTGCTGTATTCTGCCTCCCTC ACTGGAGAGGTTTTGCTGACCTTGACTGCGATGGGTGCGTTCATCTCCATGCTCGGCGCGCTCCTGAACCGTTTCTGGCG GGTCCCCCTGCCGCTGCTCCTTCCTTACTACTTCGTACTGGTGAATACGGCCTCCGCCCTCGGGGTGTTTTATCGCCTGT TGGGCCGGACCATAGTGACCTGGAGCACTGTAAGGGAGGGGGAGGCTGCTCCCCCGCCAGCGCCGCTTTTGCCGCGCTTG GCCCTTCTCTGCGTCGCGGTGCTGCTCGTGGTTACGGCAAGCGGGGTGGCGCTGGATGAGGATGCCCTCGGCGCGGCTGC CATTCTGCTGATGCTCCTGCTGGTTCACACATTCGTCGGTTACCAGTTACTTTTGCTGCCGCTGTCGCGTCTCTCACGCA GAAAACCAGCTCGGGACGAAAGCTACACCCCCATGGTCACTCTGCTGGTTGTCGCCTATAACGAGGCGAAGGTGATCGAG AAAAAGCTCTTGAACTCTCTGGAACTGGAGTATCCCAGCGACCGGCTGCGCATCCTTGTCGCCTCGGACGGCTCCAAGGA TGGCACCGACGAGATTGTCTCCCGATTCCTGGACAGGGGGGTCGAGCTCATCTCCTTTCCGGGAAACCGCGGGAAGATTT CCGCCCTGAACGACGCCATGCGGCAGATCAACTCTGACATCGTCGTTCTATCCGACGCAAACGTCTACTACATGCCCAAC GCCATCAGGAAACTAGTGCGAAACTTCGCCGACCCGGAGGTCGGCGCGGTTTCGGGTAGGGTGGTGCTCATAAATGACAG CCTGAGTTATAGCGCAGCCGAGAAGTCCTATTACTCCATCGAGCACCTGATACAGGAACTGGAGGGAAGTCTCGGTGCTC TCATCGGCGCGGACGGCGCCATGTACGCTATCCGCAGGCAGCTCTTCACCCCCCCAAGCCCCGATACCATCCTCGACGAT TTGGTAATCGCGATGGGCATTGCCCGGCAAGGGCACTTGGTCATGCACGAAAAAGAGGCGCTTGGATTCGAGGAGAACCT GTTGGAGATAGTGGGGGAGTTCCGCCGCAAAGTGAGGATCATTGCCGGCGGCTACCAATGCCTCTTGCGCGGGGACGTGA TTCCCAGGCTGTCCCAGCCGCTGCTCATGTTCTGCTTCACCTCCCATAAACTGCTGCGCTGGGTGAGCGGTTACCTGCTC GTTGCTTTGGTTGGAGTGCTGGTGCAGATCCAACTGCGCCATTCATCATCCAAATATGCGCTGGTGTTGGCAGCACTGCT TGTCGCCCTCGTCCTGGCTTTGCTGGTGCAACTGTTTCCGAGGATGAAGTCGCTCAAGATCGCATCCCTTTGCCACTACT TCTATATGCTGATGGCCGCCTCGCTGCTCGGGGGGTACCGCGGTGTTACCGGTAGACAGAAGGTGACCTGGCGTGGGGGG ACGGCCTGA
Upstream 100 bases:
>100_bases TCAGGTATTACCGCATGGCTCCGCGCCACGTCCACCAGATATACGTGCTTTTGAACGTCTACTACCTGGCCCGTGGCATC GCGATGTTGAGGCAACCGTA
Downstream 100 bases:
>100_bases TGTGTGGCATAGCCGGCTTCTTCAGAACCCTCTGTCCGGAGGGGGACACGCGCCTTTTGCGGCGGATGGGGGAGGTGATC AGCCACCGCGGTCCCGACGC
Product: group glycosyltransferase
Products: NA
Alternate protein names: PNAG synthase; Poly-beta-1,6-GlcNAc synthase; Biofilm polysaccharide intercellular adhesin synthesis protein IcaA; Biofilm PIA synthesis protein IcaA; Intercellular adhesion protein A; N-acetylglucosaminyltransferase IcaA [H]
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MVWTEITMIALLLLLAYIYLGYPLLLCLLARLIPTTHRTDDGFLPTVTLVISAYNEKGVIRAKLENSLALDYPQERLSIL VVSDCSSDGTDTEVLSFSDKGVKLMRAEERRGKTSAINTALACVDSEMVVFSDANAIYDATAIRRLVRHFVDPSIGYVVG CARYVEETVSAAGGSESTYWDLEVMLKRWESRLSSVVGGDGAIYAIRRSLYEPLKEEDINDFVNPLQIVAKGYRGVFDEE AWCVERPAGEFHKEFSRKVRIVNRSFSGFLRVPRAANPMVTGAFAWQLVSHKLLRWFSPCFLGLFFVFLVLNRLLYSASL TGEVLLTLTAMGAFISMLGALLNRFWRVPLPLLLPYYFVLVNTASALGVFYRLLGRTIVTWSTVREGEAAPPPAPLLPRL ALLCVAVLLVVTASGVALDEDALGAAAILLMLLLVHTFVGYQLLLLPLSRLSRRKPARDESYTPMVTLLVVAYNEAKVIE KKLLNSLELEYPSDRLRILVASDGSKDGTDEIVSRFLDRGVELISFPGNRGKISALNDAMRQINSDIVVLSDANVYYMPN AIRKLVRNFADPEVGAVSGRVVLINDSLSYSAAEKSYYSIEHLIQELEGSLGALIGADGAMYAIRRQLFTPPSPDTILDD LVIAMGIARQGHLVMHEKEALGFEENLLEIVGEFRRKVRIIAGGYQCLLRGDVIPRLSQPLLMFCFTSHKLLRWVSGYLL VALVGVLVQIQLRHSSSKYALVLAALLVALVLALLVQLFPRMKSLKIASLCHYFYMLMAASLLGGYRGVTGRQKVTWRGG TA
Sequences:
>Translated_802_residues MVWTEITMIALLLLLAYIYLGYPLLLCLLARLIPTTHRTDDGFLPTVTLVISAYNEKGVIRAKLENSLALDYPQERLSIL VVSDCSSDGTDTEVLSFSDKGVKLMRAEERRGKTSAINTALACVDSEMVVFSDANAIYDATAIRRLVRHFVDPSIGYVVG CARYVEETVSAAGGSESTYWDLEVMLKRWESRLSSVVGGDGAIYAIRRSLYEPLKEEDINDFVNPLQIVAKGYRGVFDEE AWCVERPAGEFHKEFSRKVRIVNRSFSGFLRVPRAANPMVTGAFAWQLVSHKLLRWFSPCFLGLFFVFLVLNRLLYSASL TGEVLLTLTAMGAFISMLGALLNRFWRVPLPLLLPYYFVLVNTASALGVFYRLLGRTIVTWSTVREGEAAPPPAPLLPRL ALLCVAVLLVVTASGVALDEDALGAAAILLMLLLVHTFVGYQLLLLPLSRLSRRKPARDESYTPMVTLLVVAYNEAKVIE KKLLNSLELEYPSDRLRILVASDGSKDGTDEIVSRFLDRGVELISFPGNRGKISALNDAMRQINSDIVVLSDANVYYMPN AIRKLVRNFADPEVGAVSGRVVLINDSLSYSAAEKSYYSIEHLIQELEGSLGALIGADGAMYAIRRQLFTPPSPDTILDD LVIAMGIARQGHLVMHEKEALGFEENLLEIVGEFRRKVRIIAGGYQCLLRGDVIPRLSQPLLMFCFTSHKLLRWVSGYLL VALVGVLVQIQLRHSSSKYALVLAALLVALVLALLVQLFPRMKSLKIASLCHYFYMLMAASLLGGYRGVTGRQKVTWRGG TA >Mature_802_residues MVWTEITMIALLLLLAYIYLGYPLLLCLLARLIPTTHRTDDGFLPTVTLVISAYNEKGVIRAKLENSLALDYPQERLSIL VVSDCSSDGTDTEVLSFSDKGVKLMRAEERRGKTSAINTALACVDSEMVVFSDANAIYDATAIRRLVRHFVDPSIGYVVG CARYVEETVSAAGGSESTYWDLEVMLKRWESRLSSVVGGDGAIYAIRRSLYEPLKEEDINDFVNPLQIVAKGYRGVFDEE AWCVERPAGEFHKEFSRKVRIVNRSFSGFLRVPRAANPMVTGAFAWQLVSHKLLRWFSPCFLGLFFVFLVLNRLLYSASL TGEVLLTLTAMGAFISMLGALLNRFWRVPLPLLLPYYFVLVNTASALGVFYRLLGRTIVTWSTVREGEAAPPPAPLLPRL ALLCVAVLLVVTASGVALDEDALGAAAILLMLLLVHTFVGYQLLLLPLSRLSRRKPARDESYTPMVTLLVVAYNEAKVIE KKLLNSLELEYPSDRLRILVASDGSKDGTDEIVSRFLDRGVELISFPGNRGKISALNDAMRQINSDIVVLSDANVYYMPN AIRKLVRNFADPEVGAVSGRVVLINDSLSYSAAEKSYYSIEHLIQELEGSLGALIGADGAMYAIRRQLFTPPSPDTILDD LVIAMGIARQGHLVMHEKEALGFEENLLEIVGEFRRKVRIIAGGYQCLLRGDVIPRLSQPLLMFCFTSHKLLRWVSGYLL VALVGVLVQIQLRHSSSKYALVLAALLVALVLALLVQLFPRMKSLKIASLCHYFYMLMAASLLGGYRGVTGRQKVTWRGG TA
Specific function: N-acetylglucosaminyltransferase that catalyzes the polymerization of single monomer units of UDP-N-acetylglucosamine to produce the linear homopolymer poly-beta-1,6-N-acetyl-D- glucosamine (PNAG, also referred to as PIA), a biofilm adhesin polysaccharide.
COG id: COG1215
COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 88871; Mature: 88871
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVWTEITMIALLLLLAYIYLGYPLLLCLLARLIPTTHRTDDGFLPTVTLVISAYNEKGVI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEE RAKLENSLALDYPQERLSILVVSDCSSDGTDTEVLSFSDKGVKLMRAEERRGKTSAINTA EEECCCCCCCCCCHHHEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHH LACVDSEMVVFSDANAIYDATAIRRLVRHFVDPSIGYVVGCARYVEETVSAAGGSESTYW HHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH DLEVMLKRWESRLSSVVGGDGAIYAIRRSLYEPLKEEDINDFVNPLQIVAKGYRGVFDEE HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC AWCVERPAGEFHKEFSRKVRIVNRSFSGFLRVPRAANPMVTGAFAWQLVSHKLLRWFSPC CHHHCCCCHHHHHHHHHHHHHHHCCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH FLGLFFVFLVLNRLLYSASLTGEVLLTLTAMGAFISMLGALLNRFWRVPLPLLLPYYFVL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VNTASALGVFYRLLGRTIVTWSTVREGEAAPPPAPLLPRLALLCVAVLLVVTASGVALDE HHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECH DALGAAAILLMLLLVHTFVGYQLLLLPLSRLSRRKPARDESYTPMVTLLVVAYNEAKVIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHH KKLLNSLELEYPSDRLRILVASDGSKDGTDEIVSRFLDRGVELISFPGNRGKISALNDAM HHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH RQINSDIVVLSDANVYYMPNAIRKLVRNFADPEVGAVSGRVVLINDSLSYSAAEKSYYSI HHCCCCEEEEECCCEEECCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH EHLIQELEGSLGALIGADGAMYAIRRQLFTPPSPDTILDDLVIAMGIARQGHLVMHEKEA HHHHHHHCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHH LGFEENLLEIVGEFRRKVRIIAGGYQCLLRGDVIPRLSQPLLMFCFTSHKLLRWVSGYLL CCHHHHHHHHHHHHHHHEEHEECCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VALVGVLVQIQLRHSSSKYALVLAALLVALVLALLVQLFPRMKSLKIASLCHYFYMLMAA HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLLGGYRGVTGRQKVTWRGGTA HHHCCCCCCCCCCEEEECCCCC >Mature Secondary Structure MVWTEITMIALLLLLAYIYLGYPLLLCLLARLIPTTHRTDDGFLPTVTLVISAYNEKGVI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEE RAKLENSLALDYPQERLSILVVSDCSSDGTDTEVLSFSDKGVKLMRAEERRGKTSAINTA EEECCCCCCCCCCHHHEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHH LACVDSEMVVFSDANAIYDATAIRRLVRHFVDPSIGYVVGCARYVEETVSAAGGSESTYW HHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH DLEVMLKRWESRLSSVVGGDGAIYAIRRSLYEPLKEEDINDFVNPLQIVAKGYRGVFDEE HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC AWCVERPAGEFHKEFSRKVRIVNRSFSGFLRVPRAANPMVTGAFAWQLVSHKLLRWFSPC CHHHCCCCHHHHHHHHHHHHHHHCCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH FLGLFFVFLVLNRLLYSASLTGEVLLTLTAMGAFISMLGALLNRFWRVPLPLLLPYYFVL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VNTASALGVFYRLLGRTIVTWSTVREGEAAPPPAPLLPRLALLCVAVLLVVTASGVALDE HHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECH DALGAAAILLMLLLVHTFVGYQLLLLPLSRLSRRKPARDESYTPMVTLLVVAYNEAKVIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHH KKLLNSLELEYPSDRLRILVASDGSKDGTDEIVSRFLDRGVELISFPGNRGKISALNDAM HHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH RQINSDIVVLSDANVYYMPNAIRKLVRNFADPEVGAVSGRVVLINDSLSYSAAEKSYYSI HHCCCCEEEEECCCEEECCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH EHLIQELEGSLGALIGADGAMYAIRRQLFTPPSPDTILDDLVIAMGIARQGHLVMHEKEA HHHHHHHCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHH LGFEENLLEIVGEFRRKVRIIAGGYQCLLRGDVIPRLSQPLLMFCFTSHKLLRWVSGYLL CCHHHHHHHHHHHHHHHEEHEECCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VALVGVLVQIQLRHSSSKYALVLAALLVALVLALLVQLFPRMKSLKIASLCHYFYMLMAA HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLLGGYRGVTGRQKVTWRGGTA HHHCCCCCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10496925 [H]