| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117206
Identifier: 197117206
GI number: 197117206
Start: 964402
End: 965328
Strand: Direct
Name: 197117206
Synonym: Gbem_0814
Alternate gene names: NA
Gene position: 964402-965328 (Clockwise)
Preceding gene: 197117202
Following gene: 197117207
Centisome position: 20.9
GC content: 62.14
Gene sequence:
>927_bases ATGTCCAAACTCACTCATGAAGATCCTCGTTCCTCGAAAGCCACCTTCTGGCTGATACTGACCACCTTCTTCTGGGGGGG CAGTTTCATCTTCAACAAGATCGGTTTCCGGGAGATCCCGCCGGTCACCTTTTTGTTCTTCCGCTTCGCCCTGGCCACGC TGCTTATGGCGGCGATCTGCCTGCCGCGCCTGAAGCGCTTCAACCGGAATGTTCTGAGAAAGGGTCTTATCGTCGGAGCC GCTCTTGCCGCCACCAACCTCTCCTTCGTCCTCGGGGTGAGCGGGACCAGCGTCTCTCGCGCCGGATTCCTTAACAACCT GTTCGTGCTCATCATTCCCTTGCTTTGCTTCGCCTTCTGGCGCGAGCGCTTCGACCGCTGGACCGCGACCGGGCTCTTTC TGGCCCTCGCCGGCCTGTGGCAGCTGGCCCAGGGCGGGGTGGAAGGGTTCAACAAGGGGGATCTGCTCTCCACCCTGTGC GCGCTCTTCATCGCCCTGCACATCATTTCGGTGTCGAAGCTTTTGCGGGACGAAGACGTCTACCTGTTGAGCCTGGTGCA ATTCGCCACGGTTACGGCGGTAGGGGGCCTGCTGTTCCTGGTGCTCCCGGCGCCTCCTTTTGCCATCGGCCCGGTCTCGG GCGGGTCGCTCCTTTACTGCGCCATCTTCCCGACCGTGATCTGTTTCACCCTGCAAAACACCTATCAGCGCTACACCACC CCCACCAAGGCTGGGCTCATCTACACCATGGACCCGGTCTGGAGCATGCTGGGGGGGACGCTGATCCTGGGGGAGCGGCT GACCGCGGGGGAGTCGCTCGGCTGTTCCCTCATCTTTGCCTCCGTCGTCCTTCCCCTTTCGATCAAGCGCCTGCGTGAGC GGCACCTGGGGATCGACTACCGCGCCGAGGGCGCAGCTGCTGAGTAG
Upstream 100 bases:
>100_bases AAAAGCGGTCCGGCGCCGCCCCCCATGGACCCGGCAGGAACCAGTGGGATAGGGGCGCTATGGGGTTGACATGAACCCCA ACCCTGGTCTTTAATAGGCG
Downstream 100 bases:
>100_bases GCAGTATGCGCCGCAGGTCGCTTTGATTGACTTCACTACATTCTCGGATACGCTCGCGCAGGTATTTCATCGCGACTTTA TAAGGAGGGGGCATGCCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MSKLTHEDPRSSKATFWLILTTFFWGGSFIFNKIGFREIPPVTFLFFRFALATLLMAAICLPRLKRFNRNVLRKGLIVGA ALAATNLSFVLGVSGTSVSRAGFLNNLFVLIIPLLCFAFWRERFDRWTATGLFLALAGLWQLAQGGVEGFNKGDLLSTLC ALFIALHIISVSKLLRDEDVYLLSLVQFATVTAVGGLLFLVLPAPPFAIGPVSGGSLLYCAIFPTVICFTLQNTYQRYTT PTKAGLIYTMDPVWSMLGGTLILGERLTAGESLGCSLIFASVVLPLSIKRLRERHLGIDYRAEGAAAE
Sequences:
>Translated_308_residues MSKLTHEDPRSSKATFWLILTTFFWGGSFIFNKIGFREIPPVTFLFFRFALATLLMAAICLPRLKRFNRNVLRKGLIVGA ALAATNLSFVLGVSGTSVSRAGFLNNLFVLIIPLLCFAFWRERFDRWTATGLFLALAGLWQLAQGGVEGFNKGDLLSTLC ALFIALHIISVSKLLRDEDVYLLSLVQFATVTAVGGLLFLVLPAPPFAIGPVSGGSLLYCAIFPTVICFTLQNTYQRYTT PTKAGLIYTMDPVWSMLGGTLILGERLTAGESLGCSLIFASVVLPLSIKRLRERHLGIDYRAEGAAAE >Mature_307_residues SKLTHEDPRSSKATFWLILTTFFWGGSFIFNKIGFREIPPVTFLFFRFALATLLMAAICLPRLKRFNRNVLRKGLIVGAA LAATNLSFVLGVSGTSVSRAGFLNNLFVLIIPLLCFAFWRERFDRWTATGLFLALAGLWQLAQGGVEGFNKGDLLSTLCA LFIALHIISVSKLLRDEDVYLLSLVQFATVTAVGGLLFLVLPAPPFAIGPVSGGSLLYCAIFPTVICFTLQNTYQRYTTP TKAGLIYTMDPVWSMLGGTLILGERLTAGESLGCSLIFASVVLPLSIKRLRERHLGIDYRAEGAAAE
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33772; Mature: 33641
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLTHEDPRSSKATFWLILTTFFWGGSFIFNKIGFREIPPVTFLFFRFALATLLMAAIC CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH LPRLKRFNRNVLRKGLIVGAALAATNLSFVLGVSGTSVSRAGFLNNLFVLIIPLLCFAFW HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH RERFDRWTATGLFLALAGLWQLAQGGVEGFNKGDLLSTLCALFIALHIISVSKLLRDEDV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH YLLSLVQFATVTAVGGLLFLVLPAPPFAIGPVSGGSLLYCAIFPTVICFTLQNTYQRYTT HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC PTKAGLIYTMDPVWSMLGGTLILGERLTAGESLGCSLIFASVVLPLSIKRLRERHLGIDY CCCCCEEEEECHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC RAEGAAAE CCCCCCCC >Mature Secondary Structure SKLTHEDPRSSKATFWLILTTFFWGGSFIFNKIGFREIPPVTFLFFRFALATLLMAAIC CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH LPRLKRFNRNVLRKGLIVGAALAATNLSFVLGVSGTSVSRAGFLNNLFVLIIPLLCFAFW HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH RERFDRWTATGLFLALAGLWQLAQGGVEGFNKGDLLSTLCALFIALHIISVSKLLRDEDV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH YLLSLVQFATVTAVGGLLFLVLPAPPFAIGPVSGGSLLYCAIFPTVICFTLQNTYQRYTT HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC PTKAGLIYTMDPVWSMLGGTLILGERLTAGESLGCSLIFASVVLPLSIKRLRERHLGIDY CCCCCEEEEECHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC RAEGAAAE CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]