| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is 197117090
Identifier: 197117090
GI number: 197117090
Start: 822181
End: 824727
Strand: Direct
Name: 197117090
Synonym: Gbem_0694
Alternate gene names: NA
Gene position: 822181-824727 (Clockwise)
Preceding gene: 197117080
Following gene: 197117091
Centisome position: 17.81
GC content: 59.21
Gene sequence:
>2547_bases ATGATACTTTCCGACACGTTCAACGCTTTATACCCTACCGCTCGGAAAGGTTCACACGTGCATTTTTACAATATTTTCCG TGCTTCATTGTCAAAGATCCTCATTGTCCTGCTTTTGGTTGCGCTCACAGTACCGGCGCCCTCCTTTGCTCTTGATTCAG AAGATTCCCAGATCTTTATCTCAGGATTTAATGCCTATCAGAAAAAGGAATATAAGACTGCCATTGACAGTATGTCAGTG CTTCTCAAGAAGTATCCTGACACACCGCTCAAGGACATGGCGATATTTTGGCTGGCGAGGGCGCACTATAAGGCTGGGCA TCAGCAGGACGCAGCAAAATACATGGCGCAGTTCCTGCGGGAATACCCGGAGAGCCCGCTCAAAGCGACGGTCGAGGATG GGCTGCTGGCGCTGGCGGACAAATATGAGAAGGGCGAGCCTCTTGAGCTGACTGCGAAGCCGGTTCAGAAACCGGTTGCG GCGCCGGACGCCGCTGCCGTTGCAAAGGCAGCCGCTGCAGAGAAGGCTGCTGCTGAGAAGGCTGCTGCAGAGAAGATCGC TGCAGAGAAGATCGCTGCAGAGAAGATCGCTGCAGAGAAGGTCGCTGCGGCAAAGGCTGCTGTCGCAAAGATTGCCGCCG AGAGAGCTGCCGCTCAGAAGGTCGCTGTGGAGAAGGCCGCTGCCGAGAAAGCTGCTGCTGTGAAAGCCGCTGCCGAGAAA GCCGCTGTAGAGAAAGCCGCTGCCGAGAAAGCCGCTGCCGAGAAAGCCGCTGCCGAGAAAGCCGCTGCCGAGAAAGCCGC TGCCGAGAAAGCCGCTGCCGAGAAAGTCGCTGCAAATAGAGCCGCTGCCGAGAAGGCCGCCAGCCAGAAGGTAGTGCGGC AGAAGACAAAGCAGGCTAAGAAAAAAGAAACCCGCGAGCAGAAGACGGCGAACGCTATGCGCGCCAAGGCCATTGCAGCA TACAAGGACGTTATCGACCGCTACCCCGGAACTACTGCCGCCGCGAATGCCTCCGCTAAGCTGCAGCAGATGGGCATCGA CTACCCCGCTGCCCAGAAAACCGCTGCAAGTGCCGCTCCCCAGGCCGAAGTCTCGCAGGTTTTCAACCTGGAGGTGGCTC AATACGCCGACCTCGACGTTACCTTCGGCCAGGCGGCTGAGACCCAGGAAGCAGGCAAAAAGTTCATCATTCCGCTGGAC ATCGTCAACAACGGCAACGGCAGTGACAGCTTCTACCTGGAGTCGGGTTTCCCCTCGGAATACGCTTTCCATTTCGCCGC TGCGACTTCCCCCGACACCCCTATCAACACCACTCCCCCCCTTGAGGTAGGGGAGAAGTTCCGCGCCGTTGCTGTAGGCA TCATGCCGCGCGGTACCATAGACGGCCAAAAGAGCAGCTTCCCGGTGAAGATCGGCTCCGCGTTCGCCCGCGAGGTGTCC CAGTCCAGGGAAATCACGCTGGTTGCTTCCGCACCGCTGCTGCGTGCCGTGGTGAAGAGCGACAAGACGAAATTGCTCCC GGGCGAGAAGATCTCCTATCGGATCTCCTTGCTGAACATCGGCACCGCCGCTGCGCGCGGGGTCACCATGAGGCTCAACT ATCCGCCGCAGTACGAGCCGGTCAGCTTCCTCCCCACCGGGTTCCGACAGGAGGCGAAGGCCGCCTTGGTGCTCGATGGG ATGCAGCTCAAGTCGGGCGAGAGCCAGGACTTCAACGTCACCTTCCAGTTGAAGGACGAGGCGCTCGCCGACCAGGAACT CTTCGTCCGGGCCGACGTTGTAAACAACGACCTCGACAAGAAGGAATCGTTTGTATCGGCAACCAGCGTGGTGCAGAAGG TCAGCTCTGTCGCCGCGAGGAGCACCGCCGGCAAGCTGGTGGTCATCCCCGGCCAGACCGTGGCGATTCCGTTGATCGTG ACTAACACCGGAAACGCCCGCGACCTGTACCTGATCAAGTCGACGATGCCGGCGAACGCCAGCTACACCTTCTTTGACGA CGTCAACCGCGACGGGAAGCGGCAGGCCGATGAACCGATCATCAACCACGTCGGGCCGCTTTCTCCCAAGGAAGAGGCCT ACATCGTGCTGGAAATCTCCACCCCGACTACCGCAGCTGACGGTGCCGTTGCCGCTGCGTCTGTCCAGTTCCAGCCGGAG AACGCCACCGACAGGTTCGCCTCCGTCAATCTGCAGCTGACTTATTCCCGCCCCATCCTCGAACTCACCATGGCTGCAAA GGGTGGAAGGCTCAAGCCTGGCGAGGTCTCCTCGCTGGAACTGAACTGCATCAATCGCGGTACCAACCTGGCCAAGCAGG TGACCCTACAAAGCTTCCTTCCGGCCCAGTTGGAGCTGGTGGCGGCCGATCCAGGCTTTGCCCGGGCCGACAACGGCGTC TATACCTGGCGCTTCGACGAGCTGGGCGCCGGCGAGAAGCGCAACATCAAGGTTACCTATCGCGTCAAACCGGGCATAGC CGTCGGAACCAACATGCAGCTCAAGAACCTGCTGAACTACCAGGATCCCATCGGAAACAGGTACTAA
Upstream 100 bases:
>100_bases CCGGGGCTAGGGCAAGCGCAAACGCTCGAAAAAACACCGTGGAATGGGGCTCGGCACAGGTGTCAAGACCGCCATTCTGC GTTGACAATATTTGTCTATA
Downstream 100 bases:
>100_bases GATGGCACGTCGCAACCTACTGATCGTCACCTCCCTGCTGGTGCTGTCCGTCGCAGGGTCTCTTCCTTGCCGCGGCGAGG AGATGCTTCTCTATGCCCCC
Product: pentapeptide repeat protein
Products: NA
Alternate protein names: Conserved Repeat Domain Protein; Pentapeptide Repeat Protein
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MILSDTFNALYPTARKGSHVHFYNIFRASLSKILIVLLLVALTVPAPSFALDSEDSQIFISGFNAYQKKEYKTAIDSMSV LLKKYPDTPLKDMAIFWLARAHYKAGHQQDAAKYMAQFLREYPESPLKATVEDGLLALADKYEKGEPLELTAKPVQKPVA APDAAAVAKAAAAEKAAAEKAAAEKIAAEKIAAEKIAAEKVAAAKAAVAKIAAERAAAQKVAVEKAAAEKAAAVKAAAEK AAVEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAEKVAANRAAAEKAASQKVVRQKTKQAKKKETREQKTANAMRAKAIAA YKDVIDRYPGTTAAANASAKLQQMGIDYPAAQKTAASAAPQAEVSQVFNLEVAQYADLDVTFGQAAETQEAGKKFIIPLD IVNNGNGSDSFYLESGFPSEYAFHFAAATSPDTPINTTPPLEVGEKFRAVAVGIMPRGTIDGQKSSFPVKIGSAFAREVS QSREITLVASAPLLRAVVKSDKTKLLPGEKISYRISLLNIGTAAARGVTMRLNYPPQYEPVSFLPTGFRQEAKAALVLDG MQLKSGESQDFNVTFQLKDEALADQELFVRADVVNNDLDKKESFVSATSVVQKVSSVAARSTAGKLVVIPGQTVAIPLIV TNTGNARDLYLIKSTMPANASYTFFDDVNRDGKRQADEPIINHVGPLSPKEEAYIVLEISTPTTAADGAVAAASVQFQPE NATDRFASVNLQLTYSRPILELTMAAKGGRLKPGEVSSLELNCINRGTNLAKQVTLQSFLPAQLELVAADPGFARADNGV YTWRFDELGAGEKRNIKVTYRVKPGIAVGTNMQLKNLLNYQDPIGNRY
Sequences:
>Translated_848_residues MILSDTFNALYPTARKGSHVHFYNIFRASLSKILIVLLLVALTVPAPSFALDSEDSQIFISGFNAYQKKEYKTAIDSMSV LLKKYPDTPLKDMAIFWLARAHYKAGHQQDAAKYMAQFLREYPESPLKATVEDGLLALADKYEKGEPLELTAKPVQKPVA APDAAAVAKAAAAEKAAAEKAAAEKIAAEKIAAEKIAAEKVAAAKAAVAKIAAERAAAQKVAVEKAAAEKAAAVKAAAEK AAVEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAEKVAANRAAAEKAASQKVVRQKTKQAKKKETREQKTANAMRAKAIAA YKDVIDRYPGTTAAANASAKLQQMGIDYPAAQKTAASAAPQAEVSQVFNLEVAQYADLDVTFGQAAETQEAGKKFIIPLD IVNNGNGSDSFYLESGFPSEYAFHFAAATSPDTPINTTPPLEVGEKFRAVAVGIMPRGTIDGQKSSFPVKIGSAFAREVS QSREITLVASAPLLRAVVKSDKTKLLPGEKISYRISLLNIGTAAARGVTMRLNYPPQYEPVSFLPTGFRQEAKAALVLDG MQLKSGESQDFNVTFQLKDEALADQELFVRADVVNNDLDKKESFVSATSVVQKVSSVAARSTAGKLVVIPGQTVAIPLIV TNTGNARDLYLIKSTMPANASYTFFDDVNRDGKRQADEPIINHVGPLSPKEEAYIVLEISTPTTAADGAVAAASVQFQPE NATDRFASVNLQLTYSRPILELTMAAKGGRLKPGEVSSLELNCINRGTNLAKQVTLQSFLPAQLELVAADPGFARADNGV YTWRFDELGAGEKRNIKVTYRVKPGIAVGTNMQLKNLLNYQDPIGNRY >Mature_848_residues MILSDTFNALYPTARKGSHVHFYNIFRASLSKILIVLLLVALTVPAPSFALDSEDSQIFISGFNAYQKKEYKTAIDSMSV LLKKYPDTPLKDMAIFWLARAHYKAGHQQDAAKYMAQFLREYPESPLKATVEDGLLALADKYEKGEPLELTAKPVQKPVA APDAAAVAKAAAAEKAAAEKAAAEKIAAEKIAAEKIAAEKVAAAKAAVAKIAAERAAAQKVAVEKAAAEKAAAVKAAAEK AAVEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAEKVAANRAAAEKAASQKVVRQKTKQAKKKETREQKTANAMRAKAIAA YKDVIDRYPGTTAAANASAKLQQMGIDYPAAQKTAASAAPQAEVSQVFNLEVAQYADLDVTFGQAAETQEAGKKFIIPLD IVNNGNGSDSFYLESGFPSEYAFHFAAATSPDTPINTTPPLEVGEKFRAVAVGIMPRGTIDGQKSSFPVKIGSAFAREVS QSREITLVASAPLLRAVVKSDKTKLLPGEKISYRISLLNIGTAAARGVTMRLNYPPQYEPVSFLPTGFRQEAKAALVLDG MQLKSGESQDFNVTFQLKDEALADQELFVRADVVNNDLDKKESFVSATSVVQKVSSVAARSTAGKLVVIPGQTVAIPLIV TNTGNARDLYLIKSTMPANASYTFFDDVNRDGKRQADEPIINHVGPLSPKEEAYIVLEISTPTTAADGAVAAASVQFQPE NATDRFASVNLQLTYSRPILELTMAAKGGRLKPGEVSSLELNCINRGTNLAKQVTLQSFLPAQLELVAADPGFARADNGV YTWRFDELGAGEKRNIKVTYRVKPGIAVGTNMQLKNLLNYQDPIGNRY
Specific function: Unknown
COG id: COG1729
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90595; Mature: 90595
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILSDTFNALYPTARKGSHVHFYNIFRASLSKILIVLLLVALTVPAPSFALDSEDSQIFI CCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEE SGFNAYQKKEYKTAIDSMSVLLKKYPDTPLKDMAIFWLARAHYKAGHQQDAAKYMAQFLR ECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH EYPESPLKATVEDGLLALADKYEKGEPLELTAKPVQKPVAAPDAAAVAKAAAAEKAAAEK HCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHH AAAEKIAAEKIAAEKIAAEKVAAAKAAVAKIAAERAAAQKVAVEKAAAEKAAAVKAAAEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAVEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAEKVAANRAAAEKAASQKVVRQKTKQAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKETREQKTANAMRAKAIAAYKDVIDRYPGTTAAANASAKLQQMGIDYPAAQKTAASAAP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCC QAEVSQVFNLEVAQYADLDVTFGQAAETQEAGKKFIIPLDIVNNGNGSDSFYLESGFPSE HHHHHHHHCCHHHHHCCCEEECCCCCCHHHCCCEEEEEEEEEECCCCCCCEEEECCCCCH YAFHFAAATSPDTPINTTPPLEVGEKFRAVAVGIMPRGTIDGQKSSFPVKIGSAFAREVS HEEEEEECCCCCCCCCCCCCHHHCCHHEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHH QSREITLVASAPLLRAVVKSDKTKLLPGEKISYRISLLNIGTAAARGVTMRLNYPPQYEP CCCCEEEEECCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHCCEEEEECCCCCCCC VSFLPTGFRQEAKAALVLDGMQLKSGESQDFNVTFQLKDEALADQELFVRADVVNNDLDK CCCCCCCCHHHCCEEEEEECEEECCCCCCCEEEEEEECCCHHCCCHHEEEEHHHCCCHHH KESFVSATSVVQKVSSVAARSTAGKLVVIPGQTVAIPLIVTNTGNARDLYLIKSTMPANA HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCCCEEEEEEECCCCCC SYTFFDDVNRDGKRQADEPIINHVGPLSPKEEAYIVLEISTPTTAADGAVAAASVQFQPE CEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCC NATDRFASVNLQLTYSRPILELTMAAKGGRLKPGEVSSLELNCINRGTNLAKQVTLQSFL CCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCC PAQLELVAADPGFARADNGVYTWRFDELGAGEKRNIKVTYRVKPGIAVGTNMQLKNLLNY CCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEEECCCHHHHHHHCC QDPIGNRY CCCCCCCC >Mature Secondary Structure MILSDTFNALYPTARKGSHVHFYNIFRASLSKILIVLLLVALTVPAPSFALDSEDSQIFI CCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEE SGFNAYQKKEYKTAIDSMSVLLKKYPDTPLKDMAIFWLARAHYKAGHQQDAAKYMAQFLR ECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH EYPESPLKATVEDGLLALADKYEKGEPLELTAKPVQKPVAAPDAAAVAKAAAAEKAAAEK HCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHH AAAEKIAAEKIAAEKIAAEKVAAAKAAVAKIAAERAAAQKVAVEKAAAEKAAAVKAAAEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAVEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAEKVAANRAAAEKAASQKVVRQKTKQAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKETREQKTANAMRAKAIAAYKDVIDRYPGTTAAANASAKLQQMGIDYPAAQKTAASAAP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCC QAEVSQVFNLEVAQYADLDVTFGQAAETQEAGKKFIIPLDIVNNGNGSDSFYLESGFPSE HHHHHHHHCCHHHHHCCCEEECCCCCCHHHCCCEEEEEEEEEECCCCCCCEEEECCCCCH YAFHFAAATSPDTPINTTPPLEVGEKFRAVAVGIMPRGTIDGQKSSFPVKIGSAFAREVS HEEEEEECCCCCCCCCCCCCHHHCCHHEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHH QSREITLVASAPLLRAVVKSDKTKLLPGEKISYRISLLNIGTAAARGVTMRLNYPPQYEP CCCCEEEEECCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHCCEEEEECCCCCCCC VSFLPTGFRQEAKAALVLDGMQLKSGESQDFNVTFQLKDEALADQELFVRADVVNNDLDK CCCCCCCCHHHCCEEEEEECEEECCCCCCCEEEEEEECCCHHCCCHHEEEEHHHCCCHHH KESFVSATSVVQKVSSVAARSTAGKLVVIPGQTVAIPLIVTNTGNARDLYLIKSTMPANA HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCCCEEEEEEECCCCCC SYTFFDDVNRDGKRQADEPIINHVGPLSPKEEAYIVLEISTPTTAADGAVAAASVQFQPE CEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCC NATDRFASVNLQLTYSRPILELTMAAKGGRLKPGEVSSLELNCINRGTNLAKQVTLQSFL CCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCC PAQLELVAADPGFARADNGVYTWRFDELGAGEKRNIKVTYRVKPGIAVGTNMQLKNLLNY CCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEEECCCHHHHHHHCC QDPIGNRY CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA