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The map label for this gene is rbn [C]

Identifier: 197116978

GI number: 197116978

Start: 701844

End: 703184

Strand: Reverse

Name: rbn [C]

Synonym: Gbem_0581

Alternate gene names: 197116978

Gene position: 703184-701844 (Counterclockwise)

Preceding gene: 197116979

Following gene: 197116977

Centisome position: 15.24

GC content: 62.57

Gene sequence:

>1341_bases
ATGAAAAATTCCAGCGATAAAAGGCCCTTTTCCACCGGGCTCATCTGGGAGTACGACCCCTCAGCCGTCGGCGGCTTCAA
GGGAAGGATGGTCCGGCTGCTACAGTTCTTGAGCTTCACCTTCTCCAACTTCATGGCCAACAACTCGCTGCTGCGCGCCA
CCGCCCTCTCCTTCACGACGGTCCTGTCGCTGGTGCCGCTTCTGGCCCTGGCCTTCTCGGTACTGAAGGGGCTGGGCGCC
CAGAACCGGCTCGCTCCCCTGATCCTGAAAGAGGTGACCGCCGGCTCGGAGGAGGTGGTGAACCGGGTGGTTTCCTACAT
CGGCAACACCAACATGGGGTCGGTCGGAGCCATCGGCCTCGCGGCTCTCCTCTTCACCGCCATCAGCATGCTGGGAAGCA
TCGAGGAGGCTTTCAACGTCGTTTGGGGGGTCCAGGAGACCCGATCCCTGTACCGGAAATTCAGCGACTACCTGAGCGTT
TTGATCAGCGCGCCGCTATTGCTGCTCGCCGCCACCAGCATCACCACCACGCTGCAGAGCAAATGGCTCATCGGGTGGCT
GATGGAGCGGACCTACCTGGGTGATCTCTTTCTCTTCATGCTCGGCCTCACCCCGTACCTGAGCGTCTGGGTGGCTATCT
TCCTCCTCTACACCTTCATTCCCAATACCCGGGTCCGCTATACCTCCGCCCTGATCGGGGCTGTCCTCGCGGGGACCCTC
TGGCAGTTCGCCCAGTGGGCCTACATCCACTTCCAGGTGGGAGCCGGCAACTACAACGCCATCTACGGCACGCTCGCGGC
GCTCCCCATACTGATGGTCTGGATCTACGTCAGCTGGATCATCGTCCTCTTCGGCATGGAGGTGGTGGCGGCGCACCAGA
ACCGGGCGTTCTTTCACCGGGACATCCGGGGGAGGAGCATCAGCCCCACCCTGCAGGAGCTGATAGCACTCGCGGCGCTG
CGGCACATCGGGGAGGCTTTCTACGGGGGATCCCCCGGGTGGGGAGAGCAGCACCTGGCCGCAAAGCTGAACATCCCGCT
GCGCATCGTGCGGGACACGCTGGAGCACCTGCGCGAGGAGGGTTTCCTCGTCTGCGCCGGCGAGGGAGAGTGCTACTACC
CGGCGCGGGATCTGAACCGGGTAACCATCGCCGAAGTACTGCTGTCGCTGAGAAACCGCGGGGTCTATGCTTCCATCTCC
GGAGAAGAGCAGGCCGAGCAGATCGTGGAAACGGTCGATGCTGCGCTCGCCAAGGCACTGGAGGGGCGTACGCTGATGGA
TCTGGCGGCTCCAGAAAAGAGTCCGGCCGGCGTTGACAAAGAGGGAGCAGTTGACATATAG

Upstream 100 bases:

>100_bases
ACCGCCCCCTTAAAAGCCCACCTAGGTGGGCTTTTTTCGTGGCAGGTAGCCCTTGGCCCGGCGCCTCGGGCGCACGGCAA
GGTATCGGTACGGAAGGATT

Downstream 100 bases:

>100_bases
TGGCCCGATTAAACTCCAGACGTGAAGCGGGTTATGCAAGATTTCAAAGACATAGACAAACAAAACCGAAGCAAGAGATC
AATCAGGGCCAAGAGACTTG

Product: membrane-bound transcriptional regulator/ribonuclease BN-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MKNSSDKRPFSTGLIWEYDPSAVGGFKGRMVRLLQFLSFTFSNFMANNSLLRATALSFTTVLSLVPLLALAFSVLKGLGA
QNRLAPLILKEVTAGSEEVVNRVVSYIGNTNMGSVGAIGLAALLFTAISMLGSIEEAFNVVWGVQETRSLYRKFSDYLSV
LISAPLLLLAATSITTTLQSKWLIGWLMERTYLGDLFLFMLGLTPYLSVWVAIFLLYTFIPNTRVRYTSALIGAVLAGTL
WQFAQWAYIHFQVGAGNYNAIYGTLAALPILMVWIYVSWIIVLFGMEVVAAHQNRAFFHRDIRGRSISPTLQELIALAAL
RHIGEAFYGGSPGWGEQHLAAKLNIPLRIVRDTLEHLREEGFLVCAGEGECYYPARDLNRVTIAEVLLSLRNRGVYASIS
GEEQAEQIVETVDAALAKALEGRTLMDLAAPEKSPAGVDKEGAVDI

Sequences:

>Translated_446_residues
MKNSSDKRPFSTGLIWEYDPSAVGGFKGRMVRLLQFLSFTFSNFMANNSLLRATALSFTTVLSLVPLLALAFSVLKGLGA
QNRLAPLILKEVTAGSEEVVNRVVSYIGNTNMGSVGAIGLAALLFTAISMLGSIEEAFNVVWGVQETRSLYRKFSDYLSV
LISAPLLLLAATSITTTLQSKWLIGWLMERTYLGDLFLFMLGLTPYLSVWVAIFLLYTFIPNTRVRYTSALIGAVLAGTL
WQFAQWAYIHFQVGAGNYNAIYGTLAALPILMVWIYVSWIIVLFGMEVVAAHQNRAFFHRDIRGRSISPTLQELIALAAL
RHIGEAFYGGSPGWGEQHLAAKLNIPLRIVRDTLEHLREEGFLVCAGEGECYYPARDLNRVTIAEVLLSLRNRGVYASIS
GEEQAEQIVETVDAALAKALEGRTLMDLAAPEKSPAGVDKEGAVDI
>Mature_446_residues
MKNSSDKRPFSTGLIWEYDPSAVGGFKGRMVRLLQFLSFTFSNFMANNSLLRATALSFTTVLSLVPLLALAFSVLKGLGA
QNRLAPLILKEVTAGSEEVVNRVVSYIGNTNMGSVGAIGLAALLFTAISMLGSIEEAFNVVWGVQETRSLYRKFSDYLSV
LISAPLLLLAATSITTTLQSKWLIGWLMERTYLGDLFLFMLGLTPYLSVWVAIFLLYTFIPNTRVRYTSALIGAVLAGTL
WQFAQWAYIHFQVGAGNYNAIYGTLAALPILMVWIYVSWIIVLFGMEVVAAHQNRAFFHRDIRGRSISPTLQELIALAAL
RHIGEAFYGGSPGWGEQHLAAKLNIPLRIVRDTLEHLREEGFLVCAGEGECYYPARDLNRVTIAEVLLSLRNRGVYASIS
GEEQAEQIVETVDAALAKALEGRTLMDLAAPEKSPAGVDKEGAVDI

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=268, Percent_Identity=29.4776119402985, Blast_Score=108, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48991; Mature: 48991

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSSDKRPFSTGLIWEYDPSAVGGFKGRMVRLLQFLSFTFSNFMANNSLLRATALSFTT
CCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VLSLVPLLALAFSVLKGLGAQNRLAPLILKEVTAGSEEVVNRVVSYIGNTNMGSVGAIGL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHH
AALLFTAISMLGSIEEAFNVVWGVQETRSLYRKFSDYLSVLISAPLLLLAATSITTTLQS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KWLIGWLMERTYLGDLFLFMLGLTPYLSVWVAIFLLYTFIPNTRVRYTSALIGAVLAGTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
WQFAQWAYIHFQVGAGNYNAIYGTLAALPILMVWIYVSWIIVLFGMEVVAAHQNRAFFHR
HHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
DIRGRSISPTLQELIALAALRHIGEAFYGGSPGWGEQHLAAKLNIPLRIVRDTLEHLREE
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHC
GFLVCAGEGECYYPARDLNRVTIAEVLLSLRNRGVYASISGEEQAEQIVETVDAALAKAL
CEEEEECCCCEECCHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHH
EGRTLMDLAAPEKSPAGVDKEGAVDI
CCCHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNSSDKRPFSTGLIWEYDPSAVGGFKGRMVRLLQFLSFTFSNFMANNSLLRATALSFTT
CCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VLSLVPLLALAFSVLKGLGAQNRLAPLILKEVTAGSEEVVNRVVSYIGNTNMGSVGAIGL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHH
AALLFTAISMLGSIEEAFNVVWGVQETRSLYRKFSDYLSVLISAPLLLLAATSITTTLQS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KWLIGWLMERTYLGDLFLFMLGLTPYLSVWVAIFLLYTFIPNTRVRYTSALIGAVLAGTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
WQFAQWAYIHFQVGAGNYNAIYGTLAALPILMVWIYVSWIIVLFGMEVVAAHQNRAFFHR
HHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
DIRGRSISPTLQELIALAALRHIGEAFYGGSPGWGEQHLAAKLNIPLRIVRDTLEHLREE
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHC
GFLVCAGEGECYYPARDLNRVTIAEVLLSLRNRGVYASISGEEQAEQIVETVDAALAKAL
CEEEEECCCCEECCHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHH
EGRTLMDLAAPEKSPAGVDKEGAVDI
CCCHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA