| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is yibN [C]
Identifier: 197116973
GI number: 197116973
Start: 698327
End: 698821
Strand: Reverse
Name: yibN [C]
Synonym: Gbem_0576
Alternate gene names: 197116973
Gene position: 698821-698327 (Counterclockwise)
Preceding gene: 197116974
Following gene: 197116972
Centisome position: 15.14
GC content: 63.23
Gene sequence:
>495_bases ATGGCTAAAACTACTGTTTCAATAATAGAAATTTCGCTGATCGTCCTGGTCGCCGCAGCGCTCGGCGTTTTCTGGAACCG GACGCTCCTGGCCGACGCCTGGCGCGGCGCCCCCACGCGGCAGGCAGCCCCCGCGCAGGCGGGCGAACAGCTTCCCATGC CGGTCGGGCTCGCCCAGGTCAAGGAGATGCTGGACGCGGGGCAGGCGGTGGTTGTGGATGCACGCAGTGCCGCAAGTTTC CGCGAGGAACACATCGCCGGCGCGCTGCCGCTGCCGCTCGAGGAGGCCAAAAAGCGCACGGGAAAGAGCCCGCTCCTGGA AAAAGTCGGCAAGGATTCGGTCGTTATCGCCTACTGCAACGGCTTTTCCTGCCACGACAGCATGGAGCTCGCTAAGCTCC TGATCGGTTCCGGATATGGCTCGGTCTACGTTTTCGAAGGGGGACTTCCTGAATGGCGGGACGCGGGCTACCCGTTAGCG AAGGGGGAACGATGA
Upstream 100 bases:
>100_bases CGGCATCTCTTTTGCGTAACATCTGTCAGGTAAATCGTCCCCTCCGCGGGGACCAGCCGCCCTCGGCGGGCGCAGATGTT CATAAAGGGTGCCAAAACCC
Downstream 100 bases:
>100_bases GCGCTGTGAAGCGATACCTTCCTGTCGCCGTCCGGATCGCTCTGGGCGGGATATTCATCTACGCTGCGCTCCCGAAGATC GCCGACCCGGTCACCTTCGC
Product: rhodanese homology domain superfamily protein
Products: NA
Alternate protein names: Rhodanese-Like Protein; Sulfur Transferase; Rhodanese Homology Domain Superfamily Protein; Rhodanese-Like Sulfur Transferase; Rhodanese-Like Domain-Containing Protein; Rhodanese-Related Sulfurtransferase; Rhodanese Domain Protein
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MAKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQVKEMLDAGQAVVVDARSAASF REEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCNGFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLA KGER
Sequences:
>Translated_164_residues MAKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQVKEMLDAGQAVVVDARSAASF REEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCNGFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLA KGER >Mature_163_residues AKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQVKEMLDAGQAVVVDARSAASFR EEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCNGFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLAK GER
Specific function: Unknown
COG id: COG0607
COG function: function code P; Rhodanese-related sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17421; Mature: 17290
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH KEMLDAGQAVVVDARSAASFREEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCN HHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHCCCCCEEEEEEC GFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLAKGER CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHCCCCCCCCCCC >Mature Secondary Structure AKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH KEMLDAGQAVVVDARSAASFREEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCN HHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHCCCCCEEEEEEC GFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLAKGER CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA