Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is yibN [C]

Identifier: 197116973

GI number: 197116973

Start: 698327

End: 698821

Strand: Reverse

Name: yibN [C]

Synonym: Gbem_0576

Alternate gene names: 197116973

Gene position: 698821-698327 (Counterclockwise)

Preceding gene: 197116974

Following gene: 197116972

Centisome position: 15.14

GC content: 63.23

Gene sequence:

>495_bases
ATGGCTAAAACTACTGTTTCAATAATAGAAATTTCGCTGATCGTCCTGGTCGCCGCAGCGCTCGGCGTTTTCTGGAACCG
GACGCTCCTGGCCGACGCCTGGCGCGGCGCCCCCACGCGGCAGGCAGCCCCCGCGCAGGCGGGCGAACAGCTTCCCATGC
CGGTCGGGCTCGCCCAGGTCAAGGAGATGCTGGACGCGGGGCAGGCGGTGGTTGTGGATGCACGCAGTGCCGCAAGTTTC
CGCGAGGAACACATCGCCGGCGCGCTGCCGCTGCCGCTCGAGGAGGCCAAAAAGCGCACGGGAAAGAGCCCGCTCCTGGA
AAAAGTCGGCAAGGATTCGGTCGTTATCGCCTACTGCAACGGCTTTTCCTGCCACGACAGCATGGAGCTCGCTAAGCTCC
TGATCGGTTCCGGATATGGCTCGGTCTACGTTTTCGAAGGGGGACTTCCTGAATGGCGGGACGCGGGCTACCCGTTAGCG
AAGGGGGAACGATGA

Upstream 100 bases:

>100_bases
CGGCATCTCTTTTGCGTAACATCTGTCAGGTAAATCGTCCCCTCCGCGGGGACCAGCCGCCCTCGGCGGGCGCAGATGTT
CATAAAGGGTGCCAAAACCC

Downstream 100 bases:

>100_bases
GCGCTGTGAAGCGATACCTTCCTGTCGCCGTCCGGATCGCTCTGGGCGGGATATTCATCTACGCTGCGCTCCCGAAGATC
GCCGACCCGGTCACCTTCGC

Product: rhodanese homology domain superfamily protein

Products: NA

Alternate protein names: Rhodanese-Like Protein; Sulfur Transferase; Rhodanese Homology Domain Superfamily Protein; Rhodanese-Like Sulfur Transferase; Rhodanese-Like Domain-Containing Protein; Rhodanese-Related Sulfurtransferase; Rhodanese Domain Protein

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MAKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQVKEMLDAGQAVVVDARSAASF
REEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCNGFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLA
KGER

Sequences:

>Translated_164_residues
MAKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQVKEMLDAGQAVVVDARSAASF
REEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCNGFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLA
KGER
>Mature_163_residues
AKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQVKEMLDAGQAVVVDARSAASFR
EEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCNGFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLAK
GER

Specific function: Unknown

COG id: COG0607

COG function: function code P; Rhodanese-related sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17421; Mature: 17290

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
KEMLDAGQAVVVDARSAASFREEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCN
HHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHCCCCCEEEEEEC
GFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLAKGER
CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHCCCCCCCCCCC
>Mature Secondary Structure 
AKTTVSIIEISLIVLVAAALGVFWNRTLLADAWRGAPTRQAAPAQAGEQLPMPVGLAQV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
KEMLDAGQAVVVDARSAASFREEHIAGALPLPLEEAKKRTGKSPLLEKVGKDSVVIAYCN
HHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHCCCCCEEEEEEC
GFSCHDSMELAKLLIGSGYGSVYVFEGGLPEWRDAGYPLAKGER
CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA