| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116917
Identifier: 197116917
GI number: 197116917
Start: 628013
End: 628732
Strand: Direct
Name: 197116917
Synonym: Gbem_0519
Alternate gene names: NA
Gene position: 628013-628732 (Clockwise)
Preceding gene: 197116916
Following gene: 197116920
Centisome position: 13.61
GC content: 62.22
Gene sequence:
>720_bases ATGACGGCAGAAAAGGCGATGGGCGACCTTCTGGATATGGTTAAACAGCAGCAGGTTTTTCTCGAGATGTTCGTGCGGTC CTGGGTCGACGACTATCGCTCCAGCGGCGGCGCAATCTTCTGCGGCAAGGGGTGTCGCAACTGCTGCAGTCTTGCCGTCC ATACCGGCTTTGCCGAGGCACTTGCCGTCGCCCGGCAGCTGGACGAGACGCAGGGGAGGGCGGTCGAGAGTTACGCAATG AAACTCAGGGAGCTGCTTAAGGGAGTGACCGAGCTTCCTGAATACCTGCGCCTGCACCGGCAGACCATGGGATTTTGCCC GCTTTTGACCGATGCCGGCGCATGCGGCGTCTATCCGGTGCGCCCTCTGTCCTGCCGCTCGCTCATCTCCACCCGGGAGA GCGTTTGGTGCGGCGCCGATTTCTCACAGCTTTCTCAGGCGGAACGGGAAGCGTTCGTGGCCGCGCTGGACCGGAAGGTG GTTGCCTTCCCGAGCCACTACGTCGCAGTGCTCCAGGAGAGCGGGAAAGAACTGGAGGAAGCTGGCGCCAAAAACATGCG TGAGCTTCTCGGATTCTCCCTCTATGGCAACCTCGGCGTCCTGGTCCATCTCTGCCGCAGCCACGGCTTTGCAGAGGCCT GCCTGGAGGGGAAAAGTTCTGCTGCCGGCTGCATCGCCGGGGCGGGGTTCGACCATCCGCTGCTGCTGACTCTCACCTAG
Upstream 100 bases:
>100_bases CGGCACGATCATGGCGGCCAGGCGAAAAAGAGCCACAGGAAGAAAAAGAAGCGCTGACCGGGGTCCTGTCACGGGAGATA CCCCGGAAGAAAGGAAAGAG
Downstream 100 bases:
>100_bases CCGGAAACCTTCTCTCCCAGCAGTGTCCGGTTAGGTCTTTGCACCACATGAATCAAGCAGTTTCCAACTTTCCCCCTCCC TAGACGAGAGGGGGGGACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MTAEKAMGDLLDMVKQQQVFLEMFVRSWVDDYRSSGGAIFCGKGCRNCCSLAVHTGFAEALAVARQLDETQGRAVESYAM KLRELLKGVTELPEYLRLHRQTMGFCPLLTDAGACGVYPVRPLSCRSLISTRESVWCGADFSQLSQAEREAFVAALDRKV VAFPSHYVAVLQESGKELEEAGAKNMRELLGFSLYGNLGVLVHLCRSHGFAEACLEGKSSAAGCIAGAGFDHPLLLTLT
Sequences:
>Translated_239_residues MTAEKAMGDLLDMVKQQQVFLEMFVRSWVDDYRSSGGAIFCGKGCRNCCSLAVHTGFAEALAVARQLDETQGRAVESYAM KLRELLKGVTELPEYLRLHRQTMGFCPLLTDAGACGVYPVRPLSCRSLISTRESVWCGADFSQLSQAEREAFVAALDRKV VAFPSHYVAVLQESGKELEEAGAKNMRELLGFSLYGNLGVLVHLCRSHGFAEACLEGKSSAAGCIAGAGFDHPLLLTLT >Mature_238_residues TAEKAMGDLLDMVKQQQVFLEMFVRSWVDDYRSSGGAIFCGKGCRNCCSLAVHTGFAEALAVARQLDETQGRAVESYAMK LRELLKGVTELPEYLRLHRQTMGFCPLLTDAGACGVYPVRPLSCRSLISTRESVWCGADFSQLSQAEREAFVAALDRKVV AFPSHYVAVLQESGKELEEAGAKNMRELLGFSLYGNLGVLVHLCRSHGFAEACLEGKSSAAGCIAGAGFDHPLLLTLT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25995; Mature: 25864
Theoretical pI: Translated: 6.49; Mature: 6.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAEKAMGDLLDMVKQQQVFLEMFVRSWVDDYRSSGGAIFCGKGCRNCCSLAVHTGFAEA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHH LAVARQLDETQGRAVESYAMKLRELLKGVTELPEYLRLHRQTMGFCPLLTDAGACGVYPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC RPLSCRSLISTRESVWCGADFSQLSQAEREAFVAALDRKVVAFPSHYVAVLQESGKELEE CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AGAKNMRELLGFSLYGNLGVLVHLCRSHGFAEACLEGKSSAAGCIAGAGFDHPLLLTLT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHCCCCCCCCEEEEEC >Mature Secondary Structure TAEKAMGDLLDMVKQQQVFLEMFVRSWVDDYRSSGGAIFCGKGCRNCCSLAVHTGFAEA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHH LAVARQLDETQGRAVESYAMKLRELLKGVTELPEYLRLHRQTMGFCPLLTDAGACGVYPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC RPLSCRSLISTRESVWCGADFSQLSQAEREAFVAALDRKVVAFPSHYVAVLQESGKELEE CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AGAKNMRELLGFSLYGNLGVLVHLCRSHGFAEACLEGKSSAAGCIAGAGFDHPLLLTLT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA