Click here to switch to the map view.

The map label for this gene is ccsA [H]

Identifier: 197116804

GI number: 197116804

Start: 481564

End: 482379

Strand: Direct

Name: ccsA [H]

Synonym: Gbem_0406

Alternate gene names: 197116804

Gene position: 481564-482379 (Clockwise)

Preceding gene: 197116803

Following gene: 197116805

Centisome position: 10.43

GC content: 60.05

Gene sequence:

>816_bases
ATGAATGCCTTGCTTTTCAACAGCACCCTGGTCATCTACGCAGTAGCCACCGTCATCTACCTTGCCTACCTGGTCAAGCC
CAAGCAATCCCTCGGACGCGCCGGTTTCTGGCTGACCGTGGCAGGCTTCGTTGTGCATTTAGGCTTCACGCTGAACCGCT
TCCTCGAAGCGGGGCACACCCCGATCACCAATCTCCACGAATCGCTTTCCTTCTTCAGCATGGCCACGGTCGGCATCTTC
ATTATGTTCGAGAGGCGCTACAAGGCGTCCATCCTCGGCTCGTTCGTCATGCCGCTGGCGCTTTTGATCCTGGCGATCTC
GGCGACCTTCTCGGCCGTCATCCCGCCGCTGAACCCCGCGCTCAAGAGCAAGTGGCTCGCCATCCATACCATCATGGCCT
TCCTCGGGTACGCGGCCTTCGCCATCTCCTTCGGCGTCAGCGTCATGTACCTGATCCAGTCGCACTTCCTGAAGAAGCGC
CGGCTCGGGCCGATGTTCCAGAAGCTGCCGCCGCTCGACATGCTGGACGACATCAGCTACCGCTGCCTTACCTTCGGCTT
CCCGCTGCTGACCTTCGCCATCATCTCCGGCGCCATCTGGGCCGAAACCGCGTGGGGCACCTACTGGAGCTGGGACCCCA
AGGAAACCTGGTCGCTCATCACCTGGTTCATCTACGCGGCGCTTCTCCACGGCCGGCTCACTACCGGCTGGCGCGGCAGG
AAAGCTGCCATGCTTTCCATTTTCGGATTTGTCATCATGCTCTTCACCTTCCTCGGCGTGAATCTTCTCCTGTCGGGGCT
GCACAGCTACAAGTAA

Upstream 100 bases:

>100_bases
TCAAAAACGGGCAGAGAGATGTAATAGACCAGATACTCCTGAAGCTCTCCGCTACCGGGGCTCGACCTGGCCCGGATGGG
GCTGATAAAAAGGAACCGTC

Downstream 100 bases:

>100_bases
GGGCAACAAGAGGCGGCAACCGCTTTTCGGTTGTGATTCTCAGGAAGAGGCAGGTTTGTTATGAATATTATTGTGGTTGG
GCTGTCGCACAAAACTGCCG

Product: ResC/HemX-like cytochrome c biogenesis membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MNALLFNSTLVIYAVATVIYLAYLVKPKQSLGRAGFWLTVAGFVVHLGFTLNRFLEAGHTPITNLHESLSFFSMATVGIF
IMFERRYKASILGSFVMPLALLILAISATFSAVIPPLNPALKSKWLAIHTIMAFLGYAAFAISFGVSVMYLIQSHFLKKR
RLGPMFQKLPPLDMLDDISYRCLTFGFPLLTFAIISGAIWAETAWGTYWSWDPKETWSLITWFIYAALLHGRLTTGWRGR
KAAMLSIFGFVIMLFTFLGVNLLLSGLHSYK

Sequences:

>Translated_271_residues
MNALLFNSTLVIYAVATVIYLAYLVKPKQSLGRAGFWLTVAGFVVHLGFTLNRFLEAGHTPITNLHESLSFFSMATVGIF
IMFERRYKASILGSFVMPLALLILAISATFSAVIPPLNPALKSKWLAIHTIMAFLGYAAFAISFGVSVMYLIQSHFLKKR
RLGPMFQKLPPLDMLDDISYRCLTFGFPLLTFAIISGAIWAETAWGTYWSWDPKETWSLITWFIYAALLHGRLTTGWRGR
KAAMLSIFGFVIMLFTFLGVNLLLSGLHSYK
>Mature_271_residues
MNALLFNSTLVIYAVATVIYLAYLVKPKQSLGRAGFWLTVAGFVVHLGFTLNRFLEAGHTPITNLHESLSFFSMATVGIF
IMFERRYKASILGSFVMPLALLILAISATFSAVIPPLNPALKSKWLAIHTIMAFLGYAAFAISFGVSVMYLIQSHFLKKR
RLGPMFQKLPPLDMLDDISYRCLTFGFPLLTFAIISGAIWAETAWGTYWSWDPKETWSLITWFIYAALLHGRLTTGWRGR
KAAMLSIFGFVIMLFTFLGVNLLLSGLHSYK

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30417; Mature: 30417

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALLFNSTLVIYAVATVIYLAYLVKPKQSLGRAGFWLTVAGFVVHLGFTLNRFLEAGHT
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PITNLHESLSFFSMATVGIFIMFERRYKASILGSFVMPLALLILAISATFSAVIPPLNPA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LKSKWLAIHTIMAFLGYAAFAISFGVSVMYLIQSHFLKKRRLGPMFQKLPPLDMLDDISY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHH
RCLTFGFPLLTFAIISGAIWAETAWGTYWSWDPKETWSLITWFIYAALLHGRLTTGWRGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
KAAMLSIFGFVIMLFTFLGVNLLLSGLHSYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA