| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116747
Identifier: 197116747
GI number: 197116747
Start: 428767
End: 429798
Strand: Direct
Name: 197116747
Synonym: Gbem_0347
Alternate gene names: NA
Gene position: 428767-429798 (Clockwise)
Preceding gene: 197116746
Following gene: 197116748
Centisome position: 9.29
GC content: 63.08
Gene sequence:
>1032_bases ATGAGGCCCGTTTTGTGGTTGAACCTCCTCTACGCGGCTGTCATCGCAGCCATCGCCCTTTCCCACCGGATAGGCGCCGA CCGCTTCTGGCCCGGCGCCTTGAACCTCTACCTCCCTCAGGTTATGTGGGCACTGCCTGGCATCATCCTGCTGCCGGTTA CCTGGAAAGCCGAGCGTCCCTGGGTTTGGCTCCCCCTTTGTGCCCTCATGTGGGTCATCGGCCCGGTGATGGGGTACAAC TGGCCCCTGAACCGGGAGAAGGGGGAAGTGTCGGGGACCCCGCTCAGGGTGATGACCTGGAACATCAAGTACGGAAAGCA TGACCTCATGCCGCTGGTGGAGGAACTGGAGCGCAGCCGCCCCGACATCGTCCTTTTCCAGGATGCGGTGCGCGCCGGGG CTGGTCCATTGGCGGGGTACTTCAAGGATTGGCACCTGCTCAGCCAGGGGCGATACCTGATCGCCAGCAGGTATCCCCTC TCGGCGGCCGAGGTTTTCGAGCTCCCCTACTCGGGGCGGAGTAAGGAGTACCTCCTGCGCTGCAAGGTGCGGGTCGGTTC CTCGGAAATATCGCTTTACGACGTCCACTTCAAGACCCCGCGCCGAAGCTTGAACGCCTTCCGGAAAGCGAAGCAAGGTC CCTGGTATATCCCGGATGCGGTGGAAAGGTTCGAGGACAACGTGACGCTGCGGCTCATCCAGGCCAGGACTGTCGCCGGA TACCTCTCCCGCGAGAAGGGGCCGGTGCTGGTGGCGGGGGACCTGAATTCGCCCGACTCTTCCCTTGTCTGCCGCACGCT CAGGGAGGCGGGGCTGGCGGACGCTTTCGCCGCGGCCGGAGAGGGGTACGGCTACACCTACGGGCATTTCCTTTTGAAAA ACAGGATTCCCTTGCTGCGCGTTTCCTGGATGCGCATCGACCACGTCATGACCAACTCCTGGCTCACCGCTTCCCGCTGC CGGGTCGGGACCGGCAGGGCGTCGGACCACCGGCCCGTGATCGCCGATTTTTTACTAAAGAATTCCCCGTAG
Upstream 100 bases:
>100_bases GACCGAGCGTGTCGCCTTACGGTAACCGGGCGGGCGCCCCTTATGCGCCAGCGCCTGTGGGCGACAGGGGCGGATCTGAC CCGGTCCCCGGAGGTGGCGC
Downstream 100 bases:
>100_bases TTGTCGTGGAGTTCCCCCACTTGTAATTGCACTTTTCAACCGAGCATGCTAGTTATGGTCGGTCTAACGAACAAGCGATC GGGCCGCCTGCGCGCCCGGA
Product: endonuclease/exonuclease/phosphatase family protein
Products: NA
Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MRPVLWLNLLYAAVIAAIALSHRIGADRFWPGALNLYLPQVMWALPGIILLPVTWKAERPWVWLPLCALMWVIGPVMGYN WPLNREKGEVSGTPLRVMTWNIKYGKHDLMPLVEELERSRPDIVLFQDAVRAGAGPLAGYFKDWHLLSQGRYLIASRYPL SAAEVFELPYSGRSKEYLLRCKVRVGSSEISLYDVHFKTPRRSLNAFRKAKQGPWYIPDAVERFEDNVTLRLIQARTVAG YLSREKGPVLVAGDLNSPDSSLVCRTLREAGLADAFAAAGEGYGYTYGHFLLKNRIPLLRVSWMRIDHVMTNSWLTASRC RVGTGRASDHRPVIADFLLKNSP
Sequences:
>Translated_343_residues MRPVLWLNLLYAAVIAAIALSHRIGADRFWPGALNLYLPQVMWALPGIILLPVTWKAERPWVWLPLCALMWVIGPVMGYN WPLNREKGEVSGTPLRVMTWNIKYGKHDLMPLVEELERSRPDIVLFQDAVRAGAGPLAGYFKDWHLLSQGRYLIASRYPL SAAEVFELPYSGRSKEYLLRCKVRVGSSEISLYDVHFKTPRRSLNAFRKAKQGPWYIPDAVERFEDNVTLRLIQARTVAG YLSREKGPVLVAGDLNSPDSSLVCRTLREAGLADAFAAAGEGYGYTYGHFLLKNRIPLLRVSWMRIDHVMTNSWLTASRC RVGTGRASDHRPVIADFLLKNSP >Mature_343_residues MRPVLWLNLLYAAVIAAIALSHRIGADRFWPGALNLYLPQVMWALPGIILLPVTWKAERPWVWLPLCALMWVIGPVMGYN WPLNREKGEVSGTPLRVMTWNIKYGKHDLMPLVEELERSRPDIVLFQDAVRAGAGPLAGYFKDWHLLSQGRYLIASRYPL SAAEVFELPYSGRSKEYLLRCKVRVGSSEISLYDVHFKTPRRSLNAFRKAKQGPWYIPDAVERFEDNVTLRLIQARTVAG YLSREKGPVLVAGDLNSPDSSLVCRTLREAGLADAFAAAGEGYGYTYGHFLLKNRIPLLRVSWMRIDHVMTNSWLTASRC RVGTGRASDHRPVIADFLLKNSP
Specific function: Unknown
COG id: COG3021
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38819; Mature: 38819
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPVLWLNLLYAAVIAAIALSHRIGADRFWPGALNLYLPQVMWALPGIILLPVTWKAERP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC WVWLPLCALMWVIGPVMGYNWPLNREKGEVSGTPLRVMTWNIKYGKHDLMPLVEELERSR EEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCC PDIVLFQDAVRAGAGPLAGYFKDWHLLSQGRYLIASRYPLSAAEVFELPYSGRSKEYLLR CCEEEEHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHEECCCCCCCCEEEEE CKVRVGSSEISLYDVHFKTPRRSLNAFRKAKQGPWYIPDAVERFEDNVTLRLIQARTVAG EEEEECCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEHHHHHH YLSREKGPVLVAGDLNSPDSSLVCRTLREAGLADAFAAAGEGYGYTYGHFLLKNRIPLLR HHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHCCCCEEE VSWMRIDHVMTNSWLTASRCRVGTGRASDHRPVIADFLLKNSP EHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCC >Mature Secondary Structure MRPVLWLNLLYAAVIAAIALSHRIGADRFWPGALNLYLPQVMWALPGIILLPVTWKAERP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC WVWLPLCALMWVIGPVMGYNWPLNREKGEVSGTPLRVMTWNIKYGKHDLMPLVEELERSR EEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCC PDIVLFQDAVRAGAGPLAGYFKDWHLLSQGRYLIASRYPLSAAEVFELPYSGRSKEYLLR CCEEEEHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHEECCCCCCCCEEEEE CKVRVGSSEISLYDVHFKTPRRSLNAFRKAKQGPWYIPDAVERFEDNVTLRLIQARTVAG EEEEECCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEHHHHHH YLSREKGPVLVAGDLNSPDSSLVCRTLREAGLADAFAAAGEGYGYTYGHFLLKNRIPLLR HHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHCCCCEEE VSWMRIDHVMTNSWLTASRCRVGTGRASDHRPVIADFLLKNSP EHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA