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The map label for this gene is yqhC [H]

Identifier: 197104472

GI number: 197104472

Start: 1114938

End: 1115828

Strand: Direct

Name: yqhC [H]

Synonym: PHZ_c1006

Alternate gene names: 197104472

Gene position: 1114938-1115828 (Clockwise)

Preceding gene: 197104468

Following gene: 197104473

Centisome position: 27.9

GC content: 71.49

Gene sequence:

>891_bases
ATGACCCACGCCTTGCGCGAGGCCGTTCGCCGCTACGCCGAGCGGCATGCTGACGCGGCGGGCGTCGCCCGCACGTCCGT
CAGGGGGCTGAACCTCGTGCGCACGACCTCGACGGGCGAACTGCGGCACGCGATCGAGCGGCCGCTGATCTGTCTTGTCG
TGCAAGGCGCCAAGCAGGTCACGATGGGGAGCCGAACCCTGACCTTCAGCGCCGGGGATTCCATGCTGCTCACCGCGGAC
GCGCCGACCGTCAGCCAGATCACCCAGGCAAGCGGCGGCGCGCCTTACCTTGCGTTGGCGCTCGACCTGGACGCGGCCGT
GATCGCCGGCCTCTGCGACGAGATGAAGGCCGCCGCCGTCGACGCCGGCCCGGCGCTCCGCTTCCAGCCCACCGACGCCG
AGGCGGCCGACGCCGCGCTGCGCCTGGTCACCCTGCTGGAGCGGCCGGCTTCCATTCCCGTGCTTCAGGCTCAGCTGGTG
CGCGAGATGCACTATTGGCTCCTCGCAGGGCGCCACGGCCCCGCCATTCGCCAGCTGGGCTCTCCCGCGAGCCAGGCGCG
GCGGATCGCGCGGGCGGTGGAGATCCTCCGCAAGGACTTCGCCGCGCCGATCCCGGTGGCGCGACTGGCGGCGGCGGCCC
GCATGAGCCCGTCGACCTTCCACAAGCATTTTCGGACCGTGACCTCGCTGTCGCCACTGCAGTTCCAGAAGCAGCTGCGG
CTCATCGAGGCGCGGCGCCTGATGCTGGCCAAGGGCCTGAGGCCGAGCGTCGCAGCCTACGAGGTGGGGTACGAGAGCGT
GCCGCAGTTCACGCGGGAGTATCGTCGCCAGTTCGGGCAACCGCCGGGCCGCGAGACCCAGCAGGCCAGGCGGGTGAACC
AAGCGGTCTGA

Upstream 100 bases:

>100_bases
TCCCCTCTTCGGGCGAGGGCGGGTTGCCCGATGCGTCGAGAACCTTGCCTAAAACTCCGACCGAGCCCTACCGTCGCGAT
CAGCCGGTAAGGATGTCCGC

Downstream 100 bases:

>100_bases
GCGTGGCGCGGGGGCGTTGACAGCGGCGCCGGTGGCGGCGCCGAGGATCCTGGCGCCCGAAGAGCGCGCGGCCTGGGTGG
CGGCCGCCCTCAGATCGTGA

Product: transcriptional regulator, AraC type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTHALREAVRRYAERHADAAGVARTSVRGLNLVRTTSTGELRHAIERPLICLVVQGAKQVTMGSRTLTFSAGDSMLLTAD
APTVSQITQASGGAPYLALALDLDAAVIAGLCDEMKAAAVDAGPALRFQPTDAEAADAALRLVTLLERPASIPVLQAQLV
REMHYWLLAGRHGPAIRQLGSPASQARRIARAVEILRKDFAAPIPVARLAAAARMSPSTFHKHFRTVTSLSPLQFQKQLR
LIEARRLMLAKGLRPSVAAYEVGYESVPQFTREYRRQFGQPPGRETQQARRVNQAV

Sequences:

>Translated_296_residues
MTHALREAVRRYAERHADAAGVARTSVRGLNLVRTTSTGELRHAIERPLICLVVQGAKQVTMGSRTLTFSAGDSMLLTAD
APTVSQITQASGGAPYLALALDLDAAVIAGLCDEMKAAAVDAGPALRFQPTDAEAADAALRLVTLLERPASIPVLQAQLV
REMHYWLLAGRHGPAIRQLGSPASQARRIARAVEILRKDFAAPIPVARLAAAARMSPSTFHKHFRTVTSLSPLQFQKQLR
LIEARRLMLAKGLRPSVAAYEVGYESVPQFTREYRRQFGQPPGRETQQARRVNQAV
>Mature_295_residues
THALREAVRRYAERHADAAGVARTSVRGLNLVRTTSTGELRHAIERPLICLVVQGAKQVTMGSRTLTFSAGDSMLLTADA
PTVSQITQASGGAPYLALALDLDAAVIAGLCDEMKAAAVDAGPALRFQPTDAEAADAALRLVTLLERPASIPVLQAQLVR
EMHYWLLAGRHGPAIRQLGSPASQARRIARAVEILRKDFAAPIPVARLAAAARMSPSTFHKHFRTVTSLSPLQFQKQLRL
IEARRLMLAKGLRPSVAAYEVGYESVPQFTREYRRQFGQPPGRETQQARRVNQAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=254, Percent_Identity=33.4645669291339, Blast_Score=138, Evalue=4e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32198; Mature: 32066

Theoretical pI: Translated: 11.28; Mature: 11.28

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHALREAVRRYAERHADAAGVARTSVRGLNLVRTTSTGELRHAIERPLICLVVQGAKQV
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHCCEEEEEECCCHHE
TMGSRTLTFSAGDSMLLTADAPTVSQITQASGGAPYLALALDLDAAVIAGLCDEMKAAAV
ECCCEEEEEECCCCEEEEECCCHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHC
DAGPALRFQPTDAEAADAALRLVTLLERPASIPVLQAQLVREMHYWLLAGRHGPAIRQLG
CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHC
SPASQARRIARAVEILRKDFAAPIPVARLAAAARMSPSTFHKHFRTVTSLSPLQFQKQLR
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHH
LIEARRLMLAKGLRPSVAAYEVGYESVPQFTREYRRQFGQPPGRETQQARRVNQAV
HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
THALREAVRRYAERHADAAGVARTSVRGLNLVRTTSTGELRHAIERPLICLVVQGAKQV
CHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHCCEEEEEECCCHHE
TMGSRTLTFSAGDSMLLTADAPTVSQITQASGGAPYLALALDLDAAVIAGLCDEMKAAAV
ECCCEEEEEECCCCEEEEECCCHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHC
DAGPALRFQPTDAEAADAALRLVTLLERPASIPVLQAQLVREMHYWLLAGRHGPAIRQLG
CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHC
SPASQARRIARAVEILRKDFAAPIPVARLAAAARMSPSTFHKHFRTVTSLSPLQFQKQLR
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHH
LIEARRLMLAKGLRPSVAAYEVGYESVPQFTREYRRQFGQPPGRETQQARRVNQAV
HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]