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The map label for this gene is ygaD [C]

Identifier: 197104468

GI number: 197104468

Start: 1109462

End: 1109941

Strand: Direct

Name: ygaD [C]

Synonym: PHZ_c1002

Alternate gene names: 197104468

Gene position: 1109462-1109941 (Clockwise)

Preceding gene: 197104462

Following gene: 197104472

Centisome position: 27.76

GC content: 74.79

Gene sequence:

>480_bases
ATGGAAGAGCTGGAACGGCTGGCGGCCGAGGTGGGCGATCGGCTCAAGGCCCGCGGCGAGCGGGTGGCCGTCAACGAGAG
CTCCTCGGGCGGGCTGGTCTCGGCGGCGCTGCTGAGCGTGGCCGGCGCCAGCGCCTACTACCTCGGCGGGGCGGTGGTCT
ACACGCCCAAGGCCCGGGTGCTGCTGACCGAGATCCCGAAGGAGGCCCTGGCCGGCATGCGCTCGGCCAGCGAGCCCTAC
GCCCTGCTGCTGGCCCGCAACGCCCGCGAGCGGTTCGGCGCGACCTGGGGCGTCTCCGAGACCGGCGCGTCCGGGCCGAC
GGGCAACCCCTACGGCGATGCGCCGGGCCACACCTGCGTGGCGATCTCGGGACCGGTCGAGGCCGTCGTCACCGTCGAGA
CGGGCGAGGCCGACCGCAGCGCCAACATGCGCGCCTTCGCCGCCGCCGCGCTGGAGCTGTTGAAGCGGGCGCTGGACTAG

Upstream 100 bases:

>100_bases
GTCCATCGAAATCCTCCCGCAGTATGCTCTTGTGTCTTCAATCGGGCCATCATGGCCGCCGAAGGCGCGGTACGTCGAGA
GGCAGGGGGAGGGAACGCGG

Downstream 100 bases:

>100_bases
CCGCCCGTCTCCCCCGCAGAGGGACGGGCGGCGTGTCCGGCAGGGTCGATCAGAACTGGACGTTCGCGCCGACGAAGACG
GTGCGTCCGCTGGAGGTCTC

Product: putative competence-damaged inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MEELERLAAEVGDRLKARGERVAVNESSSGGLVSAALLSVAGASAYYLGGAVVYTPKARVLLTEIPKEALAGMRSASEPY
ALLLARNARERFGATWGVSETGASGPTGNPYGDAPGHTCVAISGPVEAVVTVETGEADRSANMRAFAAAALELLKRALD

Sequences:

>Translated_159_residues
MEELERLAAEVGDRLKARGERVAVNESSSGGLVSAALLSVAGASAYYLGGAVVYTPKARVLLTEIPKEALAGMRSASEPY
ALLLARNARERFGATWGVSETGASGPTGNPYGDAPGHTCVAISGPVEAVVTVETGEADRSANMRAFAAAALELLKRALD
>Mature_159_residues
MEELERLAAEVGDRLKARGERVAVNESSSGGLVSAALLSVAGASAYYLGGAVVYTPKARVLLTEIPKEALAGMRSASEPY
ALLLARNARERFGATWGVSETGASGPTGNPYGDAPGHTCVAISGPVEAVVTVETGEADRSANMRAFAAAALELLKRALD

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=157, Percent_Identity=32.484076433121, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 16363; Mature: 16363

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEELERLAAEVGDRLKARGERVAVNESSSGGLVSAALLSVAGASAYYLGGAVVYTPKARV
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCEE
LLTEIPKEALAGMRSASEPYALLLARNARERFGATWGVSETGASGPTGNPYGDAPGHTCV
HHHHCCHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
AISGPVEAVVTVETGEADRSANMRAFAAAALELLKRALD
EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEELERLAAEVGDRLKARGERVAVNESSSGGLVSAALLSVAGASAYYLGGAVVYTPKARV
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCEE
LLTEIPKEALAGMRSASEPYALLLARNARERFGATWGVSETGASGPTGNPYGDAPGHTCV
HHHHCCHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
AISGPVEAVVTVETGEADRSANMRAFAAAALELLKRALD
EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA