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The map label for this gene is ycdY [H]

Identifier: 194737965

GI number: 194737965

Start: 1185156

End: 1185710

Strand: Direct

Name: ycdY [H]

Synonym: SeSA_A1203

Alternate gene names: 194737965

Gene position: 1185156-1185710 (Clockwise)

Preceding gene: 194734997

Following gene: 194733995

Centisome position: 25.17

GC content: 52.61

Gene sequence:

>555_bases
ATGAATGAGTTTTCAATCCTGTGCCGTGTGCTGGGATCGTTGTATTACCGCCAACCGCAAGATCCTTTACTGGTTCCGCT
GTTTACGTTAATCCGTGAAGGTAAACTGGCGGCAAACTGGCCGCTGGAGCAGGATGATATGCTGGCGCGTTTACAGAAAA
GCTGCGATATCACGCAGATTTCCACTGATTACAATGCGTTATTTGTTGGGGAAGAGTGCGCGGTAGCGCCATACCGCAGT
GCGTGGGTCGAAGGCGCGGAAGAGTCTGAGGTGCGCGCTTTTTTAACGTCGCGAGGGATGCCGCTGGCCGATACGCCTGC
CGATCACATTGGTACTTTATTGCTCGCGGCCTCCTGGCTGGAAGATCAGTCTGCCGAAGATGAAAGTGAAGCGCTGGAAA
CCTTATTTGCCGATTATCTGCTTCCCTGGTGCAATACCTTCCTCGGTAAAGTTGAAGCCCATGCCGTTACGCCATTCTGG
CGCACTTTGGCGCCGCTAACGCGTGATGCGATAGGGGCCATGTGGGATGAACTTCAGGAAGAAGATGAAGAATAA

Upstream 100 bases:

>100_bases
ACGTCTCGCCGCAGCGCTTACTGGCCTTTCTCGAATCACGCGGTATGGCGCCTGTACCGGAATTTGCCGAACTTTAATCG
TTATTTACGGGAAGATATCA

Downstream 100 bases:

>100_bases
TGTGATGTAAATCACTTTTAACTGCAACTGGTTTTACATCATTGCATAAAATGTGTGCGTGATCTCATTAATGTGCCGCT
TTTCTGTTATGATGCGCGCC

Product: chaperone, TorD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDDMLARLQKSCDITQISTDYNALFVGEECAVAPYRS
AWVEGAEESEVRAFLTSRGMPLADTPADHIGTLLLAASWLEDQSAEDESEALETLFADYLLPWCNTFLGKVEAHAVTPFW
RTLAPLTRDAIGAMWDELQEEDEE

Sequences:

>Translated_184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDDMLARLQKSCDITQISTDYNALFVGEECAVAPYRS
AWVEGAEESEVRAFLTSRGMPLADTPADHIGTLLLAASWLEDQSAEDESEALETLFADYLLPWCNTFLGKVEAHAVTPFW
RTLAPLTRDAIGAMWDELQEEDEE
>Mature_184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDDMLARLQKSCDITQISTDYNALFVGEECAVAPYRS
AWVEGAEESEVRAFLTSRGMPLADTPADHIGTLLLAASWLEDQSAEDESEALETLFADYLLPWCNTFLGKVEAHAVTPFW
RTLAPLTRDAIGAMWDELQEEDEE

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family [H]

Homologues:

Organism=Escherichia coli, GI1787272, Length=184, Percent_Identity=86.9565217391304, Blast_Score=338, Evalue=9e-95,
Organism=Escherichia coli, GI87081942, Length=180, Percent_Identity=29.4444444444444, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 20732; Mature: 20732

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDDMLARLQKSCDITQI
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEE
STDYNALFVGEECAVAPYRSAWVEGAEESEVRAFLTSRGMPLADTPADHIGTLLLAASWL
CCCCCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQSAEDESEALETLFADYLLPWCNTFLGKVEAHAVTPFWRTLAPLTRDAIGAMWDELQE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
EDEE
CCCC
>Mature Secondary Structure
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDDMLARLQKSCDITQI
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEE
STDYNALFVGEECAVAPYRSAWVEGAEESEVRAFLTSRGMPLADTPADHIGTLLLAASWL
CCCCCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQSAEDESEALETLFADYLLPWCNTFLGKVEAHAVTPFWRTLAPLTRDAIGAMWDELQE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
EDEE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]