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The map label for this gene is ycdZ [H]

Identifier: 194733995

GI number: 194733995

Start: 1185781

End: 1186293

Strand: Direct

Name: ycdZ [H]

Synonym: SeSA_A1204

Alternate gene names: 194733995

Gene position: 1185781-1186293 (Clockwise)

Preceding gene: 194737965

Following gene: 194734708

Centisome position: 25.18

GC content: 53.02

Gene sequence:

>513_bases
ATGTGCCGCTTTTCTGTTATGATGCGCGCCATGAACATACTTCTTTCTATTGCTATCACGACGGGCATCCTTTCTGGAAT
ATGGGGATGGGTGGCCGTCTCCCTGGGGTTACTAAGCTGGGCCGGTTTTTTAGGCTGTACGGCTTATTTCGCCTGTCCGC
AGGGCGGCTTTAAGGGATTGTTGATTTCCGCCTGTACGCTGTTAAGCGGTATGGTGTGGGCGCTGGTCATTATTCACGGT
AGCGCGCTGGCGCCGCATCTGGAAATTGTCAGTTACGTGTTGACGGGGATCGTGGCATTCCTGATGTGTATCCAGGCAAA
GCAGCTATTGCTTTCTTTTGTTCCGGGAACATTTATCGGCGCCTGCGCGACATTTGCAGGGCAGGGTGACTGGCGGTTGG
TATTACCGTCGCTGGCGCTGGGGCTAATCTTTGGCTATGCCATGAAAAATAGTGGGCTATGGCTGGCATCACGCCGCGAG
CAACATTCAGCGAATACGGCGGTCACAAAATAA

Upstream 100 bases:

>100_bases
GATGAACTTCAGGAAGAAGATGAAGAATAATGTGATGTAAATCACTTTTAACTGCAACTGGTTTTACATCATTGCATAAA
ATGTGTGCGTGATCTCATTA

Downstream 100 bases:

>100_bases
AAAAAGCGTGGGGTCTTCCCCACGCTTTGTCGTATTCATCAGGATTCTGGCGGTACTGACAGCTCACGGTATTTCACCAG
AATATCATTTTGCCTGTCCG

Product: inner membrane protein YcdZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MCRFSVMMRAMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWALVIIHG
SALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRRE
QHSANTAVTK

Sequences:

>Translated_170_residues
MCRFSVMMRAMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWALVIIHG
SALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRRE
QHSANTAVTK
>Mature_170_residues
MCRFSVMMRAMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWALVIIHG
SALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRRE
QHSANTAVTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yahC [H]

Homologues:

Organism=Escherichia coli, GI87081825, Length=163, Percent_Identity=87.1165644171779, Blast_Score=276, Evalue=6e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009476 [H]

Pfam domain/function: PF06496 DUF1097 [H]

EC number: NA

Molecular weight: Translated: 18075; Mature: 18075

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRFSVMMRAMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGFKGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LISACTLLSGMVWALVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRREQHSANTAVTK
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHCCCCCCCC
>Mature Secondary Structure
MCRFSVMMRAMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGFKGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LISACTLLSGMVWALVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRREQHSANTAVTK
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609; 9457880 [H]