Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 194737850

GI number: 194737850

Start: 3818938

End: 3819213

Strand: Direct

Name: rpoZ

Synonym: SeSA_A3949

Alternate gene names: 194737850

Gene position: 3818938-3819213 (Clockwise)

Preceding gene: 194734961

Following gene: 194736380

Centisome position: 81.1

GC content: 53.62

Gene sequence:

>276_bases
ATGGCACGCGTAACTGTTCAGGACGCTGTAGAGAAAATTGGTAACCGTTTTGACCTGGTACTGGTCGCCGCGCGTCGCGC
TCGTCAGATGCAGGTAGGCGGAAAGGATCCGCTGGTACCGGAAGAAAACGATAAAACTACCGTTATCGCGCTGCGCGAAA
TCGAAGAAGGTCTGATTAACAACCAGATCCTCGACGTCCGCGAGCGCCAGGAACAGCAAGAGCAGGAAGCCGCTGAATTA
CAAGCCGTTACCGCTATTGCTGAAGGTCGTCGTTAA

Upstream 100 bases:

>100_bases
AAAGCAGCGTCATGACGCTTTAATCAGCAAATTGTTGGCAGACTGAACCCACTTTCAGTATCATGCCCAGTCATTTCTTC
ACCTGTGGAGCATTTTAAGT

Downstream 100 bases:

>100_bases
TCACAAAGCGGGTCGCCCTTGTATCTGTTTGAAAGCCTGAATCAACTGATTCAAACCTACCTGCCGGAAGACCAGATTAA
GCGTCTTCGGCAGGCGTATC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAEL
QAVTAIAEGRR

Sequences:

>Translated_91_residues
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAEL
QAVTAIAEGRR
>Mature_90_residues
ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQ
AVTAIAEGRR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=91, Percent_Identity=100, Blast_Score=176, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CITK8 (A8ARN6)

Other databases:

- EMBL:   CP000822
- RefSeq:   YP_001456585.1
- ProteinModelPortal:   A8ARN6
- SMR:   A8ARN6
- STRING:   A8ARN6
- PRIDE:   A8ARN6
- GeneID:   5584808
- GenomeReviews:   CP000822_GR
- KEGG:   cko:CKO_05106
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   EENDKYT
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 10237; Mature: 10106

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHC
NQILDVRERQEQQEQEAAELQAVTAIAEGRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHC
NQILDVRERQEQQEQEAAELQAVTAIAEGRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA