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The map label for this gene is flhC [H]

Identifier: 194737288

GI number: 194737288

Start: 1999023

End: 1999601

Strand: Reverse

Name: flhC [H]

Synonym: SeSA_A2080

Alternate gene names: 194737288

Gene position: 1999601-1999023 (Counterclockwise)

Preceding gene: 194737939

Following gene: 194735541

Centisome position: 42.46

GC content: 50.78

Gene sequence:

>579_bases
ATGAGTGAAAAAAGCATTGTTCAGGAAGCTCGCGATATCCAGTTGGCGATGGAGTTGATTAATCTTGGCGCTCGTCTACA
AATGCTGGAAAGCGAAACACAGCTCAGCCGTGGTCGCCTCATCAGGCTGTACAAAGAATTACGCGGTAGCCCGCCGCCTA
AAGGGATGCTGCCATTTTCGACAGACTGGTTTATGACCTGGGAGCAAAATATTCATGCCTCCATGTTCTGCAACGCCTGG
CAATTTTTACTGAAGACCGGCTTATGCAGCGGTGTGGATGCGGTGATTAAAGCTTATCGGCTTTATCTTGAGCAGTGTCC
GCAACCGCCTGAAGGGCCGTTGTTGGCGCTGACTCGCGCATGGACGCTGGTGCGTTTTGTTGAAAGTGGGTTGCTTGAAT
TGTCGAGCTGTAACTGCTGCGGTGGGAACTTTATTACCCATGCGCATCAGCCCGTGGGCAGCTTTGCGTGTAGTTTATGC
CAGCCGCCATCCCGCGCAGTAAAAAGACGTAAACTTTCCCGAGATGCTGCCGATATTATTCCACAACTGCTGGATGAACA
GATCGAACAGGCTGTTTAA

Upstream 100 bases:

>100_bases
CGCGCGTCGATGATTTACAGCAGATTCACACAGGTATCATGCTTTCAACGCGTCTGCTCAATGAAGTGGACGATACGGCG
CGTAAGAAAAGGGCATGATA

Downstream 100 bases:

>100_bases
CCGAAACGGTGTGGACAAACACTCCAGCAGCGGTAAGTCATTACCGCTGCTTTTTTTTGCCTTGCCTTCGCGTTAATCGC
CCGACTGCGCATCCTGTCAT

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAW
QFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLC
QPPSRAVKRRKLSRDAADIIPQLLDEQIEQAV

Sequences:

>Translated_192_residues
MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAW
QFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLC
QPPSRAVKRRKLSRDAADIIPQLLDEQIEQAV
>Mature_191_residues
SEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAWQ
FLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQ
PPSRAVKRRKLSRDAADIIPQLLDEQIEQAV

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=192, Percent_Identity=93.75, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 21579; Mature: 21448

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA
CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII
HHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
PQLLDEQIEQAV
HHHHHHHHHHCC
>Mature Secondary Structure 
SEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA
CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII
HHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
PQLLDEQIEQAV
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]