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The map label for this gene is ycgE [H]

Identifier: 194737264

GI number: 194737264

Start: 1314856

End: 1315704

Strand: Direct

Name: ycgE [H]

Synonym: SeSA_A1356

Alternate gene names: 194737264

Gene position: 1314856-1315704 (Clockwise)

Preceding gene: 194737756

Following gene: 194735126

Centisome position: 27.92

GC content: 46.41

Gene sequence:

>849_bases
ATGGCTACTTTTAGTATTAGCGCAATGGCGGCGCAGTGTGGTGTCACAACAGCAAATATCAGGTCCTGGGAACGCTATGG
CCTGCTTCAACCTACCAAAGATGAAGTTGGCAATCGTTTTTATTGCATAGAAGATGCTATCAGAATACAGCATATTATCG
ACGCGTTAAGCAAAGGCTTCTCATTAAAAGAGATTAAACCTGCCCTCTATGGTGAAGAAACGCATTGCCGCTCGGGATGG
TTATTCTACCAGGAAGAGATTTTAGCGCAGTGTAGAAAATTCGAACCCGCCAAATTGCGAAAATTACTCTGGCGTTATGG
TCGGGAAATTCCGCCGTGTATCGTAATTGAGTCAATACTGCGTCCTTTACGGCTGTGGTTGTCCGCAGGCGATGATGATG
CACGCCGATTTGAAAAGGCATTACTGGATACTGCGATTATTGAATACGCCACGTTCCAGCTAAGTAGCGTACGAAAGGCG
CCAGCAGGCACAATGCTTATTGCTGCGTTTTCGCTGAACGACCCCATTGAGCTATGGCTGGAAACGATTAAATATTGTAG
TGAAGGTATGCGAGTTGAAGTCATCCCCTGGCAGGCGCCGATGCCCGATCTTTTATCAACGTCTTTCGAGCATATTGTTC
TGTGGCATGATGAGACATTAACTCCCGCCCAGGAAAATCTTATTCAGGCGTTAAAAGAATCGGGTAAATTTAGTCTTCAT
GTGAAAAATGGCTCAGGCTTAACATTACTGCCAGCCGTATACCGGCAGCATGAGATGCCAGAAAGCATGCAGCATGTTGC
ACCGCAAATCCATGCAAACGGCTACGAAAAATCAGGCACCGCACGTTGA

Upstream 100 bases:

>100_bases
TTTCACGTGTAAATAGTAAGGTCATTGCTTAATAATGATTTGCTTCTGATGGCGTTTAGGTTCACTATGCTTTCTTACAT
CATCATGAGGCCAGACAGGC

Downstream 100 bases:

>100_bases
GGCATCTGCATTATTAACGAACAGGGGAGGAGTAACCCCCTCCCTTGTTTATACCCTTCATACTTCAAGTTGCTTATGTG
TTGGCTACGGATTACTCGGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEVGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGW
LFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA
PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR

Sequences:

>Translated_282_residues
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEVGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGW
LFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA
PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
>Mature_281_residues
ATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEVGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGWL
FYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAP
AGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLHV
KNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=238, Percent_Identity=31.5126050420168, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788448, Length=238, Percent_Identity=26.890756302521, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32037; Mature: 31906

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEVGNRFYCIEDAIRIQHIIDALSKGF
CCEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCEEEEHHHHHHHHHHHHHHHCCC
SLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESIL
CHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
RPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAPAGTMLIAAFSLNDPIELWL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
ETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
HHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
EECCCCCCHHHHHHHHHCCHHHHHHHCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
ATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEVGNRFYCIEDAIRIQHIIDALSKGF
CEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCEEEEHHHHHHHHHHHHHHHCCC
SLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESIL
CHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
RPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAPAGTMLIAAFSLNDPIELWL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
ETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
HHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
EECCCCCCHHHHHHHHHCCHHHHHHHCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]