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The map label for this gene is ccmF [H]

Identifier: 194737150

GI number: 194737150

Start: 2354765

End: 2356696

Strand: Reverse

Name: ccmF [H]

Synonym: SeSA_A2475

Alternate gene names: 194737150

Gene position: 2356696-2354765 (Counterclockwise)

Preceding gene: 194736683

Following gene: 194737651

Centisome position: 50.05

GC content: 67.81

Gene sequence:

>1932_bases
ATGATGCCTGAATACGGCCACGCGCTGCTGTGCCTGGCGCTCGGCGTGGCGCTGCTGCTGTCCGTTTACCCGCTGTGGGG
CGTGGCGCGCGGCGACGCGCGGATGATGGCGTCGGCCGGGGTGTTCGCCTGGCTGCTGTTTATCTGCGTGGCGGGCGCGT
TTTTCGTGCTGGTGCACGCCTTTGTGGTTAACGACTTCACCGTGGCCTATGTCGCCGGCAACTCGAACACGCAGCTGCCG
GTGTGGTACCGGGTGGCCGCCACCTGGGGAGCGCACGAGGGCTCGCTGCTGCTGTGGGTGCTGCTGATGAGCGGCTGGAC
CCTGGCGGTGGCGGTGTTCAGCCGGCCGGTGCCGGCGGATATCGTCGCCCGGGTGCTGGCGGTGATGGGAATGGTCTGCG
CCGGTTTTCTGGCGTTCATCCTGTTCACTTCCAGCCCGTTCGCCCGCACGCTGCCGGCCTTTCCGGTGGAGGGGCGCGAC
CTGAACCCGCTGCTGCAGGACCCGGGGCTGATTTTCCACCCGCCGCTGCTGTACATGGGCTATGTCGGCTTCTCGGTGGC
CTTCGCCTTCGCCATCGCCGCGCTGCTGAGCGGGCGTCTGGACAGCGCGTTCACCCGTTTTGCCCGCCCGTGGACGCTGG
CGGCGTGGGTGTTCCTGACGCTGGGCATCGTGCTCGGCTCGGCGTGGGCCTACTACGAGCTGGGCTGGGGCGGCTGGTGG
TTCTGGGACCCGGTGGAGAACGCCTCCTTTATGCCGTGGCTGGCGGGCACCGCCCTGCTGCACTCGCTGGCGGTCACGGA
ACAGCGCGCCGGCTTCAGGGCGTGGACGCTGCTGCTGTCCATCTGCGCCTTCTCGCTGTGCCTGCTGGGCACCTTCCTGG
TGCGCTCCGGGGTGCTGGTGTCGGTGCACGCCTTCGCCTCCGACCCGGCACGCGGGATGTTTATCCTCGCCTTTATGGTG
CTGGTCACCGGCGGCTCGCTGCTGCTGTTCGCCGTGCGCGGGCACCGGGTGCGTTCGCGGGTGAACAACACGCTGTGGTC
GCGCGAGTCGCTGCTGCTCGGCAATAATGTCCTGCTGATGGCCGCCATGCTGGTGGTGCTGCTGGGCACCCTGCTGCCGC
TGGTGCACAAACAGCTGGGGCTGGGCAGCATTTCGGTGGGGGAGCCGTTCTTTAACACCATGTTCACCTGGCTGATGGTC
CCCTTTGCCCTGCTGCTGGGGGTGGGGCCGCTGGTGCGCTGGGGCCGGGACCGGCCGCGTAACATCAGGAAACTGCTGCT
CACCGCCCTGGTCTCCACCCTGGTGCTGTCGGTACTTTTGCCATGGCTGCTGGAAGATAAAATCATCGCCATGACGGCGG
TGGGGATGGCGATGGCCTGCTGGATTGCGGTGCTGGCGGTGGCCGAAGCCGTACAGCGCGTGTCCCGCGGCACGAAAACC
TCTCTCAGCTACTGGGGAATGGTGGCGGCGCACCTCGGGCTGGCGGTGACGATTACCGGCATCGCCTTCAGCCAGAATTA
CAGCGTGGAGCGTGACGTGCGGATGCGGGCGGGCGACAGCGTGACCATTCACGACTACCGCTTCACCTTCCGGGAGGTGC
GGGACATCACCGGCCCCAACTACCGCGGCGGGGTGGCCCTCATCGGGGTGACGCGCCACGGCGAGCCGGAGGCGGTGCTG
CACGCGGAGAAACGGCTCTACAACACCAGCCGGATGGTGATGACCGAGGCGGCGATTGACGGCGGGCTGACCCGAGACCT
GTACGCCGCGCTCGGGGAGGAGCTGGACAACGGCGCATGGGCCGTGCGCCTGTACTACAAACCGTTTGTCCGCTGGATAT
GGGCCGGGGGACTGCTGATGGCGCTGGGCGGGCTGCTGTGCCTGGCGGACCCGCGCTACCGCCGCCGTAAACCATTGCCG
GAGGCCGGATGA

Upstream 100 bases:

>100_bases
TGCTGGCCAAGCATGACGAGAACTACACCCCGCCGGAAGTGGAAAAGGCGATGCAGGAAAACCACCGCCGCCCGCAACGC
GCTGATAAGGACACCTCATC

Downstream 100 bases:

>100_bases
AACGCAACGTACTGTTATTACCGCTGCTGATTTTTCTGCTGATTGCCGCGGCGCTGCTGTGGCAGCTGGCGCGCAACGCG
CAGGGGGATGACCCGACGAA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP
VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPADIVARVLAVMGMVCAGFLAFILFTSSPFARTLPAFPVEGRD
LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV
LVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV
PFALLLGVGPLVRWGRDRPRNIRKLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL
HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP
EAG

Sequences:

>Translated_643_residues
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP
VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPADIVARVLAVMGMVCAGFLAFILFTSSPFARTLPAFPVEGRD
LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV
LVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV
PFALLLGVGPLVRWGRDRPRNIRKLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL
HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP
EAG
>Mature_643_residues
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP
VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPADIVARVLAVMGMVCAGFLAFILFTSSPFARTLPAFPVEGRD
LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV
LVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV
PFALLLGVGPLVRWGRDRPRNIRKLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL
HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP
EAG

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=646, Percent_Identity=84.984520123839, Blast_Score=1076, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=571, Percent_Identity=40.630472854641, Blast_Score=322, Evalue=3e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70468; Mature: 70468

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD
HHHCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHH
IVARVLAVMGMVCAGFLAFILFTSSPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHCCCCEECCHHHHHH
YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHEEEECCCCEE
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNVLLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCHHHH
AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCH
NIRKLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
HHHHHHHHHHHHCHHEEEEEEEEECCCCCCCCHHHCCCCEEEEEHHHHHHHHHHHCCCCC
YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
EEEEHHHHHHHHHHHCCHHHHHCCHHEECCCCHHHCCCCCCCC
>Mature Secondary Structure
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD
HHHCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHH
IVARVLAVMGMVCAGFLAFILFTSSPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHCCCCEECCHHHHHH
YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHEEEECCCCEE
FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNVLLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCHHHH
AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCH
NIRKLLLTALVSTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
HHHHHHHHHHHHCHHEEEEEEEEECCCCCCCCHHHCCCCEEEEEHHHHHHHHHHHCCCCC
YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
EEEEHHHHHHHHHHHCCHHHHHCCHHEECCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]