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The map label for this gene is ompC [H]

Identifier: 194736918

GI number: 194736918

Start: 2371221

End: 2372357

Strand: Reverse

Name: ompC [H]

Synonym: SeSA_A2493

Alternate gene names: 194736918

Gene position: 2372357-2371221 (Counterclockwise)

Preceding gene: 194734600

Following gene: 194735324

Centisome position: 50.38

GC content: 52.51

Gene sequence:

>1137_bases
ATGAAAGTTAAAGTACTGTCCCTCCTGGTACCAGCTCTGCTGGTGGCAGGCGCAGCGAATGCGGCTGAAATTTATAATAA
AGACGGCAACAAATTAGACCTGTTTGGTAAAGTTGATGGCCTGCACTACTTCTCTGACGACAAAGGCAGCGACGGCGACC
AGACCTACATGCGTATCGGCTTCAAAGGCGAAACGCAGGTTAACGATCAGCTGACCGGTTATGGCCAGTGGGAATATCAG
ATTCAGGGCAACCAGACTGAAGGCAGCAACGACTCCTGGACGCGTGTGGCGTTTGCGGGTCTGAAATTCGCTGACGCAGG
TTCCTTCGATTATGGTCGTAACTACGGCGTAACCTATGATGTGACCTCCTGGACCGACGTTCTGCCGGAGTTTGGCGGCG
ACACCTACGGCGCTGACAACTTTATGCAGCAGCGTGGTAACGGCTATGCTACCTACCGTAACACCGACTTCTTCGGCCTG
GTGGATGGTCTGGACTTCGCGTTACAGTATCAGGGCAAAAACGGCAGCGTGAGCGGTGAAAACACCAACGGTCGCAGCCT
GCTGAACCAGAACGGCGACGGTTACGGCGGATCGCTGACTTATGCAATCGGCGAAGGCTTCTCTGTCGGTGGCGCTATCA
CCACGTCTAAACGTACTGCCGATCAGAACAACACCGCTGACGCTCGCCTGTATGGTAACGGTGATCGCGCTACGGTCTAC
ACCGGCGGCCTGAAATACGATGCGAACAACATCTATCTGGCAGCGCAGTATTCTCAGACCTATAACGCAACCCGTTTTGG
TACCTCTAACGGCAACAATAAGTCCGACTCTTACGGTTTTGCCAACAAAGCGCAGAACTTTGAAGTGGTTGCTCAGTACC
AGTTCGACTTTGGTCTGCGTCCGTCTGTGGCTTACCTGCAGTCTAAAGGTAAGGACATCAGCAACGGCTACGGCGCCAGC
TATGGCGACCAGGACATCGTAAAATACGTTGATGTCGGCGCGACTTACTACTTCAACAAAAACATGTCCACCTATGTTGA
TTACAAAATCAACCTGCTGGATAAAAACGACTTTACCCGCGATGCGGGCATCAACACCGACGACATCGTAGCGCTGGGTC
TGGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TATTTTTGCGGAGAATGGACTTGCCGACTGGTTAATGAGGGTTAACCAGTAAGCAGTGGCATAAAAAAGCAATAAAGGCA
TATAACAGAGGGTTAATAAC

Downstream 100 bases:

>100_bases
TCAGCAAAAGATGTTGCTAAAGGGCCTGCGGGCCCTTTTTTCATGCCTTATTCCGGCGTACAAATACGACGTTTTGATAT
ACGCTTGCGTCCATTCGAAT

Product: outer membrane porin protein C

Products: NA

Alternate protein names: Porin ompC [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQ
IQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL
VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTADARLYGNGDRATVY
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGNNKSDSYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGAS
YGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF

Sequences:

>Translated_378_residues
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQ
IQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL
VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTADARLYGNGDRATVY
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGNNKSDSYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGAS
YGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF
>Mature_378_residues
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQ
IQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL
VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTADARLYGNGDRATVY
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGNNKSDSYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGAS
YGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=384, Percent_Identity=78.90625, Blast_Score=580, Evalue=1e-167,
Organism=Escherichia coli, GI1787641, Length=388, Percent_Identity=67.2680412371134, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1786436, Length=381, Percent_Identity=56.6929133858268, Blast_Score=398, Evalue=1e-112,
Organism=Escherichia coli, GI1787160, Length=386, Percent_Identity=57.5129533678757, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41312; Mature: 41312

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIG
CEEEHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYD
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECEEEECCCCCCCCCCCCEEEE
VTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKNGSVSGE
CCCHHHHHHHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECCCEEEEEECCCCCCCCCC
NTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTADARLYGNGDRATVY
CCCCCHHHCCCCCCCCCEEEEEECCCEECCCEEEECCCCCCCCCCCCEEEEECCCEEEEE
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGNNKSDSYGFANKAQNFEVVAQYQFDFGLR
ECCEEECCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
PSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTR
CCHHHHHHCCCCCCCCCCCCCCCHHHHHHEECCEEEEECCCCCEEEEEEEEEECCCCCCC
DAGINTDDIVALGLVYQF
CCCCCHHHEEEEEEEECC
>Mature Secondary Structure
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIG
CEEEHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYD
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECEEEECCCCCCCCCCCCEEEE
VTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKNGSVSGE
CCCHHHHHHHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECCCEEEEEECCCCCCCCCC
NTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTADARLYGNGDRATVY
CCCCCHHHCCCCCCCCCEEEEEECCCEECCCEEEECCCCCCCCCCCCEEEEECCCEEEEE
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGNNKSDSYGFANKAQNFEVVAQYQFDFGLR
ECCEEECCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
PSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTR
CCHHHHHHCCCCCCCCCCCCCCCHHHHHHEECCEEEEECCCCCEEEEEEEEEECCCCCCC
DAGINTDDIVALGLVYQF
CCCCCHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2684785; 3412902; 11677608; 12644504; 10405180 [H]