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The map label for this gene is ssaS

Identifier: 194736402

GI number: 194736402

Start: 1463445

End: 1463558

Strand: Direct

Name: ssaS

Synonym: SeSA_A1516

Alternate gene names: 194736402

Gene position: 1463445-1463558 (Clockwise)

Preceding gene: 194736899

Following gene: 194734680

Centisome position: 31.08

GC content: 39.47

Gene sequence:

>114_bases
ATGATTAAATTATTGGCAATTGCAATAACCTTAATGGTCAGCTACCCATGGCTTAGCGGTATCCTGTTGAATTATACCCG
GCAGATAATGTTACGAATTGGAGAGCATGGTTGA

Upstream 100 bases:

>100_bases
TTTTACGTCTATGCCGGTGGTGTTGGTGGCATCGGTAGTTGGTGTCATCGTAAGCCTTGTTCAGGCCTTGACTCAAATAC
AGGACCAAACGCTACAGTTC

Downstream 100 bases:

>100_bases
ATGGCACAACAGGTAAATGAGTGGCTTATTGCATTGGCTGTGGCTTTTATTCGACCATTGAGCCTCTCTTTATTACTTCC
CCTATTAAAAAGTGGCAGTT

Product: secretion system apparatus protein SsaS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 37; Mature: 37

Protein sequence:

>37_residues
MIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG

Sequences:

>Translated_37_residues
MIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG
>Mature_37_residues
MIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG

Specific function: Part of a type III secretion system

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSAS_SALTY (P74891)

Other databases:

- EMBL:   X99944
- EMBL:   AE006468
- RefSeq:   NP_460385.1
- GeneID:   1252938
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1420
- HOGENOM:   HBG729002
- OMA:   WLGSEVL
- ProtClustDB:   PRK15350
- BioCyc:   STYP99287:STM1420-MONOMER
- InterPro:   IPR002191
- InterPro:   IPR006306
- PRINTS:   PR00952
- TIGRFAMs:   TIGR01403

Pfam domain/function: PF01313 Bac_export_3

EC number: NA

Molecular weight: Translated: 4230; Mature: 4230

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1e8550a4)-; HASH(0x1dd220fc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
8.1 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
8.1 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9023191; 11677609