Click here to switch to the map view.

The map label for this gene is epaR [H]

Identifier: 194734680

GI number: 194734680

Start: 1463559

End: 1464338

Strand: Direct

Name: epaR [H]

Synonym: SeSA_A1517

Alternate gene names: 194734680

Gene position: 1463559-1464338 (Clockwise)

Preceding gene: 194736402

Following gene: 194734066

Centisome position: 31.08

GC content: 38.85

Gene sequence:

>780_bases
ATGGCACAACAGGTAAATGAGTGGCTTATTGCATTGGCTGTGGCTTTTATTCGACCATTGAGCCTCTCTTTATTACTTCC
CCTATTAAAAAGTGGCAGTTTAGGGTCCGCGCTTTTACGTAATGGCGTGCTTATGTCACTTACCTTTCCCATATTACCAA
TCATTTACCAGCAGAAGATTATGATGCATATTGGTAAAGATTACAGTTGGTTAGGGTTAGTCACCGGAGAGGTGATTATT
GGTTTTTTAATTGGGTTTTGTGCGGCGGTTCCCTTTTGGGCCGTTGATATGGCGGGGTTTCTGCTTGATACTTTACGTGG
CGCGACAATGGGTACGATATTCAATTCTACAATGGAAGCTGAAACCTCACTTTTTGGCTTGCTTTTCAGCCAGTTTTTGT
GTGTTATTTTCTTTATAAGCGGCGGCATGGAGTTTATATTAAACATTCTGTATGAGTCATACCAATATTTACCACCGGGG
CGTACTTTATTATTTGATCGGCAATTTTTAAAATATATTCAGGCAGAGTGGAGAACACTTTATCAATTATGCATCAGTTT
TTCTGTTCCTGCCATAATATGTATGGTATTAGCCGATCTGGCTTTAGGTCTTTTAAATCGGTCGGCACAACAATTGAATG
TATTTTTCTTCTCAATGCCGCTCAAAAGTATATTAGTTTTACTAACGCTCCTGATCTCATTCCCTTATGCTCTTCATCAC
TATTTGGTTGAAAGCGATAAATTTTATATTTATCTGAAAGACTGGTTCCCATCTGTATGA

Upstream 100 bases:

>100_bases
GGCAATTGCAATAACCTTAATGGTCAGCTACCCATGGCTTAGCGGTATCCTGTTGAATTATACCCGGCAGATAATGTTAC
GAATTGGAGAGCATGGTTGA

Downstream 100 bases:

>100_bases
GCGAGAAAACAGAACAGCCTACAGAAAAGAAATTACGTGATGGCCGTAAGGAAGGGCAGGTCGTCAAAAGTATTGAAATA
ACATCATTATTTCAGCTGAT

Product: type III secretion apparatus protein SpaR/YscT/HrcT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGSALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVII
GFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG
RTLLFDRQFLKYIQAEWRTLYQLCISFSVPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
YLVESDKFYIYLKDWFPSV

Sequences:

>Translated_259_residues
MAQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGSALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVII
GFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG
RTLLFDRQFLKYIQAEWRTLYQLCISFSVPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
YLVESDKFYIYLKDWFPSV
>Mature_258_residues
AQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGSALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIG
FLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGR
TLLFDRQFLKYIQAEWRTLYQLCISFSVPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHHY
LVESDKFYIYLKDWFPSV

Specific function: Part of a type III secretion system [H]

COG id: COG4791

COG function: function code U; Type III secretory pathway, component EscT

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002010
- InterPro:   IPR006304 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 29292; Mature: 29161

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCEEEEECCCCCCC
>Mature Secondary Structure 
AQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGSALLRNGVLMSLTFPILPIIYQQKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
YQLCISFSVPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
YLVESDKFYIYLKDWFPSV
HHHCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]