Click here to switch to the map view.

The map label for this gene is yiiY [H]

Identifier: 194736391

GI number: 194736391

Start: 1179341

End: 1180033

Strand: Direct

Name: yiiY [H]

Synonym: SeSA_A1196

Alternate gene names: 194736391

Gene position: 1179341-1180033 (Clockwise)

Preceding gene: 194734648

Following gene: 194736971

Centisome position: 25.04

GC content: 35.93

Gene sequence:

>693_bases
ATGAAAATCAACAGATATCTTCTGGGTATGGTTTCGTTTATAGAATTTTCATCATATCTACAAGCGGCAACCCTTGATTA
TCGGCATGAATATGCTGATAGAACCAGAATTAATAAAGACCGTATTGCTATAATTGAAAAACTTCCTAACGGCATTGGTT
TTTATGTCGATGCCAGCGTTAAATCGGGAGGAGTAGATGGTGAGCAGGATAAGCATTTAAGCGATCTCGTCGCAAACGCT
ATAGAACTGGGCGTAAGTTATAATTATAAAGTTACGGACCATTTTGTTTTGCAGCCTGGATTTATATTTGAAAGCGGTCC
AGATACTTCAATTTATAAGCCTTATTTAAGGGGGCAATATAATTTTGATTCTGGTGTTTATATGGCTGGTCGTTACCGCT
ATGACTATGCAAGAAAGACAGCTAACTACAATGATGATGAGAAAACGAATAGATTTGATACTTATATAGGTTATGTTTTT
GATGAGTTGAAATTAGAATATAACTTTACCTGGATGGATAGCGATCAAATTAAATTTGATAACAAAAAAACAAACTATGA
GCATAATGTGGCTTTAGCCTGGAAACTGAATAAGTCATTTACACCATACGTTGAGGTTGGAAATGTAGCGGTGAGAAATA
ATACCGATGAGAGACAGACCCGTTATCGCGTTGGATTACAATACCACTTTTGA

Upstream 100 bases:

>100_bases
CTGTTTCGTCTGTAACCTCCTTTACCATGCGTGATGGTAATTTATTAATAAAATAATTTTTAAATACAAAAATAAAGTTA
ATTGATAAGCGGAGTATTTT

Downstream 100 bases:

>100_bases
GAAAGGTTAAAGAGTTACTGTACTAATCTTTGCTTAGTATACATATCGATAATCTTATAGCCCGTGGCTACGTTACAGAA
CGTTAGACTTTGTCTTGAGT

Product: oligogalacturonate-specific porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKINRYLLGMVSFIEFSSYLQAATLDYRHEYADRTRINKDRIAIIEKLPNGIGFYVDASVKSGGVDGEQDKHLSDLVANA
IELGVSYNYKVTDHFVLQPGFIFESGPDTSIYKPYLRGQYNFDSGVYMAGRYRYDYARKTANYNDDEKTNRFDTYIGYVF
DELKLEYNFTWMDSDQIKFDNKKTNYEHNVALAWKLNKSFTPYVEVGNVAVRNNTDERQTRYRVGLQYHF

Sequences:

>Translated_230_residues
MKINRYLLGMVSFIEFSSYLQAATLDYRHEYADRTRINKDRIAIIEKLPNGIGFYVDASVKSGGVDGEQDKHLSDLVANA
IELGVSYNYKVTDHFVLQPGFIFESGPDTSIYKPYLRGQYNFDSGVYMAGRYRYDYARKTANYNDDEKTNRFDTYIGYVF
DELKLEYNFTWMDSDQIKFDNKKTNYEHNVALAWKLNKSFTPYVEVGNVAVRNNTDERQTRYRVGLQYHF
>Mature_230_residues
MKINRYLLGMVSFIEFSSYLQAATLDYRHEYADRTRINKDRIAIIEKLPNGIGFYVDASVKSGGVDGEQDKHLSDLVANA
IELGVSYNYKVTDHFVLQPGFIFESGPDTSIYKPYLRGQYNFDSGVYMAGRYRYDYARKTANYNDDEKTNRFDTYIGYVF
DELKLEYNFTWMDSDQIKFDNKKTNYEHNVALAWKLNKSFTPYVEVGNVAVRNNTDERQTRYRVGLQYHF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082420, Length=235, Percent_Identity=25.1063829787234, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009331
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06178 KdgM [H]

EC number: NA

Molecular weight: Translated: 26951; Mature: 26951

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINRYLLGMVSFIEFSSYLQAATLDYRHEYADRTRINKDRIAIIEKLPNGIGFYVDASV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCC
KSGGVDGEQDKHLSDLVANAIELGVSYNYKVTDHFVLQPGFIFESGPDTSIYKPYLRGQY
CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECEEEEECCCEEEECCCCCCEECHHHCCCC
NFDSGVYMAGRYRYDYARKTANYNDDEKTNRFDTYIGYVFDELKLEYNFTWMDSDQIKFD
CCCCCEEEEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHEEEEEEEEEEEEEECCCCEEEC
NKKTNYEHNVALAWKLNKSFTPYVEVGNVAVRNNTDERQTRYRVGLQYHF
CCCCCCCCCEEEEEEECCCCCCEEEECCEEEECCCHHHHHEEEEEEEECC
>Mature Secondary Structure
MKINRYLLGMVSFIEFSSYLQAATLDYRHEYADRTRINKDRIAIIEKLPNGIGFYVDASV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCC
KSGGVDGEQDKHLSDLVANAIELGVSYNYKVTDHFVLQPGFIFESGPDTSIYKPYLRGQY
CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECEEEEECCCEEEECCCCCCEECHHHCCCC
NFDSGVYMAGRYRYDYARKTANYNDDEKTNRFDTYIGYVFDELKLEYNFTWMDSDQIKFD
CCCCCEEEEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHEEEEEEEEEEEEEECCCCEEEC
NKKTNYEHNVALAWKLNKSFTPYVEVGNVAVRNNTDERQTRYRVGLQYHF
CCCCCCCCCEEEEEEECCCCCCEEEECCEEEECCCHHHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]