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The map label for this gene is rhmD

Identifier: 194736010

GI number: 194736010

Start: 2404115

End: 2405320

Strand: Reverse

Name: rhmD

Synonym: SeSA_A2519

Alternate gene names: 194736010

Gene position: 2405320-2404115 (Counterclockwise)

Preceding gene: 194734370

Following gene: 194735224

Centisome position: 51.08

GC content: 53.98

Gene sequence:

>1206_bases
ATGACTCTTCCTAAAATTAAACACGTTCGAGCCTGGTTTATTGGGGGCGCTACCGCAGAGAAAGGGGCTGGCGGCGGGGA
TTATCACGACCAGGGAGGAAATCACTGGATTGATGACCATATCGCCACTCCCATGAGCAAATATCGCGACTATGAGCAGT
CTCGTCAGTCTTTTGGGATCAACGTGTTAGGGACGCTGATCGTCGAAGTAGAGGCGGAAAATGGGCAGACGGGGTTCGCC
GTTTCGACAGCAGGGGAGATGGGCTGTTTTATCGTAGAAAAACATCTTAACCGGTTTATTGAAGGCAAATGCGTAAGCGA
TATCAAACTTATTCACGATCAGATGCTCGGCGCGACCATGTACTACTCCGGTTCCGGCGGTCTGGTGATGAACACGATTT
CCTGTGTGGATCTGGCGCTGTGGGATCTGTTTGGCAAGGTGGTTGGGCTGCCGGTTTATAAATTGCTGGGCGGAGCGGTG
CGCGATGAAATTCAGTTTTACGCCACCGGCGCACGCCCGGATCTGGCTAAAGAAATGGGCTTTATCGGCGGTAAAATGCC
GACTCACTGGGGACCGCACGATGGTGATGCGGGGATCCGTAAAGATGCCGCGATGGTGGCGGATATGCGTGAAAAGTGCG
GGCCGGATTTCTGGCTGATGCTCGACTGCTGGATGAGTCAGGATGTGAACTATGCGACTAAACTGGCTCACGCCTGTGCG
CCATTTAATCTCAAATGGATTGAAGAGTGTCTGCCGCCGCAGCAGTATGAAGGCTATCGCGAATTAAAACGCAACGCGCC
TGCAGGGATGATGGTTACCAGCGGCGAACACCATGGTACGCTGCAATCCTTCCGCACTCTGGCAGAAACCGGCATTGATA
TTATGCAGCCGGATGTTGGCTGGTGCGGCGGATTAACCACGCTGGTTGAGATCGCCGCGCTTGCCAAATCGCGCGGGCAA
CTGGTGGTGCCGCACGGTTCGTCTGTCTATTCGCACCATGCAGTTATTACTTTCACTAATACCCCTTTCAGCGAGTTCCT
GATGACCAGCCCGGACTGCTCCACCCTGCGTCCGCAATTTGACCCGATTCTCCTGGATGAGCCGGTGCCGGTGAATGGAC
GCATCCATAAATCAGTGCTGGATAAGCCGGGCTTCGGCGTCGAGCTTAACCGTGACTGTCACTTGAAACGCCCTTATAGC
CACTAA

Upstream 100 bases:

>100_bases
TATTTGGCCGGTAAAGCTATTGCCTGTGCCAAAGATATTTCACGCCTGTTGGGATGGAAAAGTCCCTTCGACTCACTCGC
ATCTTAAAATGGAGAATATT

Downstream 100 bases:

>100_bases
TAACTCGTGCGTTGCCTTTGTACGGCAACGCCCTCATCCTGTTGAGGATATTGCTATGAGCATCACTTTACTTGACGGCG
TAGTGAAGAAAAACCGCGCA

Product: mandelate racemase/muconate lactonizing enzyme family protein

Products: NA

Alternate protein names: RhamD

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDHIATPMSKYRDYEQSRQSFGINVLGTLIVEVEAENGQTGFA
VSTAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV
RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACA
PFNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAKSRGQ
LVVPHGSSVYSHHAVITFTNTPFSEFLMTSPDCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCHLKRPYS
H

Sequences:

>Translated_401_residues
MTLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDHIATPMSKYRDYEQSRQSFGINVLGTLIVEVEAENGQTGFA
VSTAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV
RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACA
PFNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAKSRGQ
LVVPHGSSVYSHHAVITFTNTPFSEFLMTSPDCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCHLKRPYS
H
>Mature_400_residues
TLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDHIATPMSKYRDYEQSRQSFGINVLGTLIVEVEAENGQTGFAV
STAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAVR
DEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAP
FNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAKSRGQL
VVPHGSSVYSHHAVITFTNTPFSEFLMTSPDCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCHLKRPYSH

Specific function: Catalyzes the dehydration of L-rhamnonate to 2-keto-3- deoxy-L-rhamnonate (KDR)

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. RhamD subfamily

Homologues:

Organism=Escherichia coli, GI226510960, Length=401, Percent_Identity=96.2593516209476, Blast_Score=816, Evalue=0.0,
Organism=Escherichia coli, GI48994953, Length=243, Percent_Identity=30.4526748971193, Blast_Score=88, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHMD_SALCH (Q57M62)

Other databases:

- EMBL:   AE017220
- HSSP:   Q8ZNF9
- ProteinModelPortal:   Q57M62
- SMR:   Q57M62
- GenomeReviews:   AE017220_GR
- KEGG:   sec:SC2294
- HOGENOM:   HBG705576
- OMA:   DEVVPMF
- ProtClustDB:   PRK15440
- BioCyc:   SENT321314:SCH_2294-MONOMER
- HAMAP:   MF_01288
- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354
- PANTHER:   PTHR13794
- SMART:   SM00922

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N

EC number: =4.2.1.90

Molecular weight: Translated: 44120; Mature: 43989

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00908 MR_MLE_1; PS00909 MR_MLE_2

Important sites: ACT_SITE 329-329 BINDING 33-33 BINDING 59-59 BINDING 349-349

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDHIATPMSKYRDYEQSRQSFGI
CCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCC
NVLGTLIVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATM
EEEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEEE
YYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATGARPDLAKEMG
EECCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHCEEEEECCCCCHHHHHHH
FIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACA
HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHC
PFNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQPDVG
CCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCHHCCCCCC
WCGGLTTLVEIAALAKSRGQLVVPHGSSVYSHHAVITFTNTPFSEFLMTSPDCSTLRPQF
HHHHHHHHHHHHHHHHCCCCEEECCCCCEECCEEEEEECCCCHHHHHCCCCCCCCCCCCC
DPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCHLKRPYSH
CCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
TLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDHIATPMSKYRDYEQSRQSFGI
CCCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCC
NVLGTLIVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATM
EEEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEEE
YYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATGARPDLAKEMG
EECCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHCEEEEECCCCCHHHHHHH
FIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACA
HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHC
PFNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQPDVG
CCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCHHCCCCCC
WCGGLTTLVEIAALAKSRGQLVVPHGSSVYSHHAVITFTNTPFSEFLMTSPDCSTLRPQF
HHHHHHHHHHHHHHHHCCCCEEECCCCCEECCEEEEEECCCCHHHHHCCCCCCCCCCCCC
DPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCHLKRPYSH
CCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA